Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq13912 190 1e-46 seq6297 118 7e-25 seq19758 105 5e-21 seq29490 100 2e-19 seq9689 71.6 1e-10 >seq13912 Length=1025 Score = 190 bits (210), Expect = 1e-46 Identities = 126/140 (90%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 196 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTG 137 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | ||| ||||||| ||||||| |||||||||||||||||| Sbjct 136 CTTTCGCACCTGCTCGACCTGTCCGTCTCGCAGTCAAGCAACCTTTTGCCATTGCACTAT 77 Query 121 CACTACGATTTCCGACCGTA 140 || ||||||||||||||||| Sbjct 76 CAGTACGATTTCCGACCGTA 57 >seq6297 Length=2229 Score = 118 bits (130), Expect = 7e-25 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | |||||||||||||||| || Sbjct 1685 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATGTCCGT 1626 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||| || ||||| |||| || ||||||| ||||||| |||||||| Sbjct 1625 CTTTCGACCCTGGTCGGCTTGTTTGTCTCACAGTCAAGCAAGCTTTTGCTATTGCACT 1568 >seq19758 Length=685 Score = 105 bits (116), Expect = 5e-21 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||||||||||||||||| | |||||||||||||| | || Sbjct 514 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGTACCACCGGATCACTAAGTCCGA 455 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | ||| ||||||| |||||| | ||| |||| ||||||| | Sbjct 454 CTTTCGTCCCTGCTCGACCTGTACGTCTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCT 395 Query 121 CACTACGATTTCCGACCG 138 |||||||| |||| Sbjct 394 TCGCGCGATTTCCAACCG 377 >seq29490 Length=372 Score = 100 bits (110), Expect = 2e-19 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 19 CGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAG 78 ||||||||||||||| || | |||||||||||||||| || |||||| ||| || | Sbjct 1 CGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCGTCTTTCGACCCTGGTCGAC 60 Query 79 TTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||| || ||||||| ||| |||||||||||| Sbjct 61 TTGTTGGTCTCACAGTCAAGCAAGCTTATGCCATTGCACT 100 >seq9689 Length=1487 Score = 71.6 bits (78), Expect = 1e-10 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCA---CCGGATCACTATGAC 57 ||||||||||||||||||||| || |||||| || ||||| ||||||||||| | Sbjct 872 TACCTTTTATCCGTTGAGCGACAGCGCTTCCA--CA-AGCCACTGCCGGATCACTAGTCC 928 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | ||| |||| || |||||| | ||| ||| || ||| Sbjct 929 CGACTTTCGTCCCTGCTCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 988 Query 118 T 118 | Sbjct 989 T 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351882721300