Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq13906 324 2e-86 seq9689 318 9e-85 seq6297 316 3e-84 seq13912 271 1e-70 seq31493 237 2e-60 seq21295 212 1e-52 seq18880 212 1e-52 seq23694 199 6e-49 seq27985 192 9e-47 seq19758 167 4e-39 seq1161 163 4e-38 seq19421 156 7e-36 seq25171 136 6e-30 seq28455 120 5e-25 seq27568 109 9e-22 >seq13906 Length=1026 Score = 324 bits (358), Expect = 2e-86 Identities = 237/274 (86%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||||||||| |||||| ||||||| |||| || ||||| ||||| Sbjct 277 GAGGGAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCATACATAGCTACCCAG 218 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || || |||||||| || |||||| |||||||||| ||| || |||||||||||||||| Sbjct 217 CTGCGCTCTTGGCAGAACGACTGGTACACCAGAGGTATGTTCAACCCGGTCCTCTCGTAC 158 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || || ||||||||||||||| ||||||||| | |||||||||| ||||||||||| Sbjct 157 TAGGGTCAACTCCTCTCAAATTTCG-ACGCCCACGGCAGATAGGGACCAAACTGTCTCGC 99 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 98 GACGTTCTGAACCCAGCTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGGACC 39 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 38 TGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 5 >seq9689 Length=1487 Score = 318 bits (352), Expect = 9e-85 Identities = 235/274 (86%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||| | Sbjct 537 GAGGTAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACATAGCTACCCGG 596 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| ||| ||||||||||| ||||| | ||||||||||||| Sbjct 597 CGATGCGACTGGCGTCACAACCGGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTAC 656 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct 657 TAGGAGCAGATCCTCTCAAATTTCCAGCGCCCACGGTAGATAGGGACCGAACTGTCTCAC 716 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 717 GACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 776 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| ||||||||||||| ||||||||||||||| Sbjct 777 TACTCCAGCCCCAGGATGCGACGAGCCGACATCG 810 >seq6297 Length=2229 Score = 316 bits (350), Expect = 3e-84 Identities = 229/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 2011 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 1952 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 1951 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 1892 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| |||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 1891 CCCCACTCAAACTTCCAGCGCCCACAACAGATAGGGACCGAACTGTCTCGCGACGTTCTG 1832 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 1831 AACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGC 1772 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 1771 CCCAGGATGTGACGAGCCGACATCG 1747 >seq13912 Length=1025 Score = 271 bits (300), Expect = 1e-70 Identities = 225/275 (82%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| | | ||| |||||||||| |||||| ||||| ||||| |||||||| |||| Sbjct 532 CGAGGCGAGTTTCACGCTTAGATGCTTTCAGCGTTTATCTCTTCCGCACTTAGCTACCCA 473 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||||| | |||||| | ||||||| |||||||||| ||||| |||||||||||||| Sbjct 472 GCTATACCATTGGCATGATAACTGGTCCACCAGAGGTGCGTCCACTCCGGTCCTCTCGTA 413 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| | ||| ||| |||||| || | |||||||| | |||||||||| ||||||||| Sbjct 412 CTAGGAGCAGGTCCCCTCAAACTTGCAGCGCCCACGGCAGATAGGGACCAAACTGTCTCA 353 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||| | |||||||||| ||| || |||||| ||||||||||| ||||||||||| Sbjct 352 CGACGTTTTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGAC 293 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 292 CGGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 258 >seq31493 Length=321 Score = 237 bits (262), Expect = 2e-60 Identities = 196/239 (82%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 |||| || |||| |||||||||| |||||| ||||||| ||| || ||||| | | || Sbjct 239 AGGAAGGTTTCGCGCTTAGATGCTTTCAGCGCTTATCCTTTCTGTACATAGCTACTCTGC 180 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||| | ||||| | | |||||| ||| | || ||||||||||||||||| Sbjct 179 ACTGCACCTGGCGGCACAACAGATACACCAGCGGTACATACAACCCGGTCCTCTCGTACT 120 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 |||| || ||||| ||| || | |||||||| || ||||| |||| |||||||| ||| Sbjct 119 AAGGTCATGTCCTCGCAATTTACTAACGCCCACCACAGATAGAGACCAAACTGTCTTGCG 60 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 59 ACGTTCTGAACCCAGTTCACGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 1 >seq21295 Length=622 Score = 212 bits (234), Expect = 1e-52 Identities = 167/200 (84%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| |||||||||| |||||| |||||| |||| ||| ||||| ||||||||||| Sbjct 202 GGTTTCACGCTTAGATGCTTTCAGCGTTTATCCTTTCCGAACGTAGCTACCCAGCTATGC 143 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | ||||||||| ||||| |||| ||||| ||||||||||||||||| | Sbjct 142 TCCTGGCGGAACAACTGGTACACCATTGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAG 83 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| ||| |||||| || ||||||| ||| ||||||||||||||||||||| ||||||| Sbjct 82 CAGTTCCCTTCAAATCTCTTACGCCCGCGATGGATAGGGACCGAACTGTCTCACGACGTT 23 Query 188 CTGAACCCAGCTCGCGTGCC 207 ||||||||||||| ||| || Sbjct 22 CTGAACCCAGCTCACGTACC 3 >seq18880 Length=726 Score = 212 bits (234), Expect = 1e-52 Identities = 167/200 (84%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| ||||||||||||||||| |||||| |||| | ||||| | | ||||||| Sbjct 202 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCATTCCGTATATAGCTACTCTGCTATGC 143 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| ||||| | | |||||||| | |||||||||||||||||||||||| ||| Sbjct 142 CCTTGGCAGGACAACAGATCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACTAGGGA 83 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| |||| |||| ||||||| |||||| | |||||||||||||||||||| ||||||| Sbjct 82 CAGATCCTGTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTT 23 Query 188 CTGAACCCAGCTCGCGTGCC 207 ||||||||| ||| ||| || Sbjct 22 CTGAACCCAACTCACGTACC 3 >seq23694 Length=536 Score = 199 bits (220), Expect = 6e-49 Identities = 167/205 (81%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| || ||||| ||| ||| ||| |||| Sbjct 205 GCTTAGATGCTTTCAGCGGTTATCTATTCCGTACATAGCTACCCTGCTGCGCAGCTGGCG 146 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 || || ||| |||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 145 CCACGACAGGTCCACCAGAGGTACGTCCATCCCGGTCCTCTCGTACTAGGGACAGATCCT 86 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| ||| || |||||| | |||||||||| ||||||||| ||||||||||||||| Sbjct 85 CTCAAGCTTCGAACACCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTCTGAACCC 26 Query 196 AGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| ||| || |||||| |||| Sbjct 25 AGCTCACGTACCACTTTAAATGGCG 1 >seq27985 Length=411 Score = 192 bits (212), Expect = 9e-47 Identities = 154/186 (83%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| |||||||||||| || ||||| ||| | Sbjct 186 GAGGGGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCATACATAGCTACCCGG 127 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||| ||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 126 CTGTGCCACTGGCGTGACAACCGGTGCACCAGAGGTATGTTCATCCCGGTCCTCTCGTAC 67 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||| ||| |||| || |||||| | |||||||||||||||||||| | Sbjct 66 TAGGGACAAATCCTCGCAACATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCAC 7 Query 182 GACGTT 187 |||||| Sbjct 6 GACGTT 1 >seq19758 Length=685 Score = 167 bits (184), Expect = 4e-39 Identities = 103/110 (94%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 |||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||| Sbjct 685 GACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAG 626 Query 226 CCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||||| ||||||||||||| || |||||||||||| Sbjct 625 CCCAACCCTTGGGACCTACTACAGCCCCAGGATGTGATGAGCCGACATCG 576 >seq1161 Length=8540 Score = 163 bits (180), Expect = 4e-38 Identities = 194/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || || Sbjct 7785 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCTTTT--CA- 7729 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || || Sbjct 7728 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGAATCTT 7670 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 7669 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 7610 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 7609 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 7550 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 7549 GATGTGATGAGTCGACATCG 7530 >seq19421 Length=701 Score = 156 bits (172), Expect = 7e-36 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | ||| Sbjct 516 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 575 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||| ||||||||| | |||||||||||||| || |||||||||||||| Sbjct 576 CGGTGCACCTGGCGGTACAACTGATACACCAGAGGTTTGTTCAATTCGGTCCTCTCGTAC 635 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || ||||||||| || |||||| | | ||||| |||||||||||||| | Sbjct 636 TAGAATCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 695 Query 182 GACGTT 187 |||||| Sbjct 696 GACGTT 701 >seq25171 Length=490 Score = 136 bits (150), Expect = 6e-30 Identities = 151/200 (76%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCCT 135 ||||| |||| ||||| ||| || | | ||||| ||||||||| | | | |||| Sbjct 274 TACAATTGGTACACCATAGGCATGCTTTTTTCAGTCCTTTCGTACTAAAAAAAAGTTCCT 215 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 || | |||| || | | | |||||||||||||||| || | |||||||||||| Sbjct 214 CTTTATTTTCTTAATCTAGCAGCAGATAGGGACCGAACTGGTTCTCACCGTTCTGAACCC 155 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || ||||||| ||||||||| ||||||||| ||| || |||| |||| Sbjct 154 AGCTCACGTACCACTTTAATTAGCGAACAGCTAAACCCTTGGAACCACCTGCAGCTCCAG 95 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 94 GATGTGATGAGCCGACATCG 75 >seq28455 Length=398 Score = 120 bits (132), Expect = 5e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| ||||||| ||| || ||||| ||| Sbjct 139 CGAGGGAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTACATAGCTACCCT 80 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||| || |||||| || || ||| |||||||||| || || ||||||||||||||| Sbjct 79 GCTGCGCCGTTGGCACGACGACAGGTACACCAGAGGTACGTTCAACCCGGTCCTCTCGTA 20 Query 121 CTAAGGACAGCTCCTCTCA 139 ||| || || ||||||||| Sbjct 19 CTAGGGTCAACTCCTCTCA 1 >seq27568 Length=422 Score = 109 bits (120), Expect = 9e-22 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| || ||| |||||||||| |||||| |||||| |||| || ||||| | ||| Sbjct 135 GAGGTAGGTTTCACGCTTAGATGCTTTCAGCGTTTATCCTTTCCGTACATAGCTACTCAG 76 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||| | ||||||| | |||||| ||| || | |||||||||||||||| Sbjct 75 CACTGCACCTGGCGGCACAACTGATTCACCAGCGGTACGTACGACCCGGTCCTCTCGTAC 16 Query 122 TAAGGACAGCTCCTC 136 ||||| || ||||| Sbjct 15 TAAGGTCACGTCCTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780531183004