Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002002.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq1753 109 6e-22 seq8031 82.4 8e-14 >seq1753 Length=6338 Score = 109 bits (120), Expect = 6e-22 Identities = 120/156 (77%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 |||||||||||| | || || || ||||||||| |||| || |||||| | || || Sbjct 5935 TGCTGACCAACACCCCCGGCGTGCTGGACAAGGCCGGCAGCCTGCTGACCGACCTC-ACG 5877 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 ||| | | |||| |||| |||||||||||||||||| |||||||||||||| ||| Sbjct 5876 GCGCGCGAGATCGACGCCCTGTTCGCCGACGGCACCATCTCGGGCGGCATGCTGCCCAAG 5817 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGG-CGGCGT 155 ||| | |||| ||||| || | ||||| |||||| Sbjct 5816 ATCAGCGGCGCCCTGGATGCTG-CCAAGGCCGGCGT 5782 >seq8031 Length=1797 Score = 82.4 bits (90), Expect = 8e-14 Identities = 117/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 || ||||||||| || || || || |||||| ||| | || |||||| | | ||| Sbjct 615 TGTTGACCAACACACCCGGCGTGCTGAACAAGGCCGGCGAACTGCTGACCGACCT-GACG 673 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 ||| | | |||| |||| ||||||| ||||| |||| ||||||||||||||| ||| Sbjct 674 GCGCGCGAGATCGACGGCCTGTTCGCCGATGGCACGATCTCCGGCGGCATGCTGCCCAAG 733 Query 121 AT--CCGTTGCGCACTGGAAGCAGTGCAAGG-CGGCGTG 156 || ||| |||| || || || | ||||| ||||||| Sbjct 734 ATTGCCG--GCGCGCTCGATGCTG-CCAAGGCCGGCGTG 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534216014597