Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq5977 203 5e-50 seq7719 201 2e-49 seq16256 181 2e-43 seq3850 165 1e-38 seq15027 123 4e-26 >seq5977 Length=2335 Score = 203 bits (224), Expect = 5e-50 Identities = 200/257 (78%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTC 68 |||||||||||||||| || | ||||||| || |||| | || | ||| |||| || | Sbjct 70 GCGGCCGCTGGATTTCACGATCTTCCCGATC-ATCCTGCTGATGACCACCATGCTGCGGC 128 Query 69 TGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCG 128 |||| ||||||| |||||||| || || | ||||| |||||||| ||||||||| || Sbjct 129 TGGCGCTGAACGTGGCCTCCACCCGCGTCATCCTGCTCAACGGCCAGAACGGCCATGACG 188 Query 129 CTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCG 188 | ||||| ||||| ||| |||||||| || | ||| | || || ||||||| |||| Sbjct 189 CCGCCGGCAAGGTCATCGCCGCCTTCGGCGAATTCGTGGTGGGTGGCAACTACGCCGTCG 248 Query 189 GTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCG 248 | |||||||||||||| ||||||| ||||||||||| ||||| | |||||||| || | Sbjct 249 GCATCGTGGTGTTCGCCATCCTGACCATCATCAACTTCGTGGTCATCACCAAGGGTGCGG 308 Query 249 GGCGGATTTCCGAGGTG 265 | || || |||| ||| Sbjct 309 GCCGTATCGCCGAAGTG 325 >seq7719 Length=1859 Score = 201 bits (222), Expect = 2e-49 Identities = 211/275 (77%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGA-CGTATTCTGCAGGTGGCGACCCTGCTACGT 67 ||| |||||||| ||| | | ||||||| ||| |||| | | | ||| |||| || Sbjct 515 GCGCCCGCTGGACTTCACCATCTTCCCGATCGTG--CTGCTGATCACCACCATGCTGCGG 458 Query 68 CTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCC 127 ||||| ||||||| |||||||| || ||| | |||| |||||||| ||||||||| Sbjct 457 CTGGCGCTGAACGTGGCCTCCACCCGCGTGATCCTGCTGAACGGCCAGAACGGCCATGAT 398 Query 128 GCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTC 187 || || || ||||| ||| |||||||| || | ||||||||||| ||||| | |||| Sbjct 397 GCCGCGGGCAAGGTCATCGCCGCCTTCGGCGAATTCGTGATCGGCGGCAACTATGCGGTC 338 Query 188 GGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCC 247 || |||||||||||||||||||||| |||||||| || ||||| | |||||||| || Sbjct 337 GGCATCGTGGTGTTCGCGATCCTGACCATCATCAATTTCGTGGTCATTACCAAGGGTGCG 278 Query 248 GGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 || || |||| || |||| |||||| || | ||| Sbjct 277 GGCCGCGTTTCGGAAGTGACCGCGCGCTTCATCCT 243 >seq16256 Length=862 Score = 181 bits (200), Expect = 2e-43 Identities = 206/275 (75%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 8 TGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGT 67 ||||||||||||| ||||||| ||||| | | |||| | || | || ||| | || Sbjct 562 TGCGGCCGCTGGACTTCGCGGCCTTCCCATCCG-TGCTGCTGCTGACCACGCTGATGCGG 620 Query 68 CTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCC 127 ||| | ||||||| || ||||| || |||||| |||| | ||||| ||||| | Sbjct 621 CTGTCGCTGAACGTGGCTTCCACCCGCGTGGTGCTGCTGGAGGGCCACACCGGCCCGGGG 680 Query 128 GCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTC 187 || ||||| ||||||| |||||||||| | | |||||||||| |||| || |||| Sbjct 681 GCCGCCGGCGCGGTGATCGAGGCCTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTC 740 Query 188 GGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCC 247 ||| | | |||||| | |||||| || | |||||||| |||||||||||||||||||| Sbjct 741 GGTCTGATCGTGTTCACCATCCTGGTGGTGATCAACTTCGTGGTGGTGACCAAGGGCGCG 800 Query 248 GGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 | |||||| |||||||| || || || ||||| Sbjct 801 GAGCGGATCGCCGAGGTGTCGGCCCGCTTCACCCT 835 >seq3850 Length=3401 Score = 165 bits (182), Expect = 1e-38 Identities = 201/273 (74%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 10 CGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCT 69 ||||||||||| || |||| ||||| || | |||| | || | || ||| | || || Sbjct 2357 CGGCCGCTGGACTTTGCGGCCTTCCCCTCG-GTGCTGCTGCTGACCACGCTGATGCGCCT 2299 Query 70 GGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGC 129 | | ||||||| |||||||| || |||||| |||| | ||||| ||||| | || Sbjct 2298 GTCGCTGAACGTGGCCTCCACCCGCGTGGTGCTGCTGGAAGGCCACACCGGCCCCGGAGC 2239 Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189 |||||| ||||||| |||||||||| | | |||||||||| |||| || |||||| Sbjct 2238 GGCCGGTGCGGTGATCGAGGCCTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTCGG 2179 Query 190 TATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGG 249 | | |||||||| |||||| || | |||||||| |||||| | |||||||| |||| Sbjct 2178 CCTGATCGTGTTCGCCATCCTGGTGGTGATCAACTTCGTGGTGATCACCAAGGGTGCCGA 2119 Query 250 GCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 ||| || |||| || || || || ||||| Sbjct 2118 GCGTATCGCCGAAGTCTCGGCCCGCTTCACCCT 2086 >seq15027 Length=941 Score = 123 bits (136), Expect = 4e-26 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140 GTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTG 199 |||||| |||||||||| | | |||||||||| |||| || ||||||| | | ||| Sbjct 941 GTGATCGAGGCCTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTCGGTCTGATCGTG 882 Query 200 TTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCC 259 ||| | |||||| || | |||||||| |||||||||||||||||||| | |||||| || Sbjct 881 TTCACCATCCTGGTGGTGATCAACTTCGTGGTGGTGACCAAGGGCGCGGAGCGGATCGCC 822 Query 260 GAGGTGAGCGCGCGGTTTACCCT 282 |||||| || || || ||||| Sbjct 821 GAGGTGTCGGCCCGCTTCACCCT 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809321267623