Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq24388 154 5e-35 seq10325 93.3 1e-16 >seq24388 Length=515 Score = 154 bits (170), Expect = 5e-35 Identities = 155/197 (79%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| ||| |||| ||||||||||||| | ||||| | |||| | ||||||||| || Sbjct 323 TCGACCATCGTGTTCTGGTCGTTCCGGGTGATGGTCGCCATGGGCCTGCTGATGATCCTC 382 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 |||| | || |||| |||||| |||| || ||| ||| | ||| ||| |||| Sbjct 383 GCCGGCGT-GTGGAGCCTGTGGCT-GCGCTGGCGCGGCAACCTCTACCGGTCGCGCCCGT 440 Query 124 TCCTGTAC--CTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTG 181 | |||||| ||| | | |||||||||||||||||| ||||||| || ||||||||||| Sbjct 441 TTCTGTACTTCTGCC--TATGGATGGGCCCGTCCGGGCTGATCGCCATCCTCGCCGGCTG 498 Query 182 GTTCACCACGGAAATCG 198 ||||||||| ||||||| Sbjct 499 GTTCACCACCGAAATCG 515 >seq10325 Length=1392 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 155 CGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGT 214 ||| || |||||| | || ||||||||||| ||| || || ||||| ||||||||||| Sbjct 191 CGGCTTCATCGCGCTGCTGTCCGGCTGGTTCGTCACCGAGATGGGCCGACAGCCGTGGGT 132 Query 215 GGTCTACGGCCTGATGCGCACGGCGGATGCG 245 |||||| |||||| ||||||| || |||||| Sbjct 131 GGTCTATGGCCTGCTGCGCACCGCCGATGCG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1724187023328