Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq10287 125 1e-26 seq2139 98.7 2e-18 seq1946 86.0 1e-14 >seq10287 Length=1396 Score = 125 bits (138), Expect = 1e-26 Identities = 233/343 (68%), Gaps = 28/343 (8%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||| |||||| ||||| ||||| |||||| |||| || | ||||| ||| | | Sbjct 112 CGACCGGCTGCGCTTCGTGGCCGAGCGTGCCGAGGTGGGCGAGGAGCGCGAGGCGCTTTT 171 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 ||||||||||| |||||| | | ||||||||||||| || ||||| | ||||||||| Sbjct 172 TGCCGTGACCATCCCCGAGGAACGCGGCAGCTTCAAGCGCTTTTGCGAAGTCGTGGGCAA 231 Query 121 ---------------GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGA 165 |||| | | ||||| ||||||||||| || | || | | | Sbjct 232 GCTGCCTGGCGGCCCGCGCAACGTGACCGAGTTCAACTACCGCATCAGCCACGAGAACAA 291 Query 166 GGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAG--CGCGCTG 223 ||| || |||| || ||| || ||| || || || | || || || | | Sbjct 292 GGCCCATGTCTTCGTGGGCCTG-------ACCACGGCAGCGCGCGGCG-AGTCCGAGAAG 343 Query 224 ATCGCCAG---CCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTG 280 |||||||| | | ||||||| ||| || ||||||||||||| | || || Sbjct 344 ATCGCCAGGAACTTCGAGAAGCAGGGCTTCGAGGCGCTGGACCTGACCTTCGACGACATG 403 Query 281 GCCAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGC 323 |||||| ||| | ||||| ||||||||||||||| || ||| Sbjct 404 GCCAAGGAGCATCTGCGCCACATGGTCGGCGGCCATTCGCCGC 446 >seq2139 Length=5515 Score = 98.7 bits (108), Expect = 2e-18 Identities = 236/348 (68%), Gaps = 38/348 (11%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||| |||||| ||||| ||||| |||||| |||| || | ||||| ||| | | Sbjct 1522 CGACCGGCTGCGCTTCGTGGCCGAGCGTGCCGAGGTGGGCGAGGAGCGCGAGGCGCTTTT 1463 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCG-TTCTGCGAGGCCGTGG--- 116 ||||||||||| |||||| ||| ||||||||| |||| || ||||||| |||| Sbjct 1462 TGCCGTGACCATCCCCGAGGAGCGTGGCAGCTTC-CGGCGTTTTTGCGAGGTGGTGGGCG 1404 Query 117 ------------GCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCG-GCAGC 163 ||| |||| | | ||||| ||||||||||| || || || || || Sbjct 1403 CGCTGCCCGGCAGCACGCGCAACGTGACCGAGTTCAACTACCGCATCAACGACGCGCGGC 1344 Query 164 GAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGAC--CCCCGCAGCGCGC 221 | || || | || || ||||| |||| | ||| || | | | ||| ||||| Sbjct 1343 G-TGCCCATGTGTTCGTGGGCGT---GACCACCACCGGCAAGGGCGGCTCCG-AGCGC-- 1291 Query 222 TGATCGC-CAGCCTGAC--CGAGC---AGGGTTTCCCGGTGCTGGACCTGACCGAGAATG 275 ||||| ||| ||| || || | || ||| || ||||||||| || | | | Sbjct 1290 --ATCGCACAG---GACTTCGTGCGCAACGGCTTCGAGGCGCTGGACCTCACGCACGACG 1236 Query 276 AGCTGGCCAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGC 323 | ||||||||| ||| | ||||| |||| ||||||| | |||||| Sbjct 1235 AACTGGCCAAGGAGCATCTGCGCCACCTGGTGGGCGGCCGTTCGGCGC 1188 >seq1946 Length=5892 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||| |||||| ||||| |||||||||||| |||| || | ||||| ||| | | Sbjct 5729 CGACCGGCTGCGCTTCGTGGCCGAGCGCGCCGAGGTGGGCGAGGAGCGCGAGGCGCTGCT 5788 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCG-TTCTGCGAGGCCGTGGGC 118 ||||| ||||| |||||| ||| ||||||||| |||| || ||||||| || ||| Sbjct 5789 GGCCGTCACCATCCCCGAGGAGCGTGGCAGCTTC-CGGCGCTTTTGCGAGGTGGTCGGC 5846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026834943392