Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq12265 381 1e-103 seq11603 311 1e-82 seq16125 158 2e-36 seq17238 149 1e-33 seq2697 143 4e-32 seq13603 113 8e-23 seq26773 98.7 2e-18 seq687 77.0 5e-12 >seq12265 Length=1173 Score = 381 bits (422), Expect = 1e-103 Identities = 257/285 (90%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 11 CCAGGAGACCACAGACGGCA-ACGGCGATGACCAGCAACAGCGGGAAATTTAGCGACATA 69 |||| ||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 612 CCAGCAGACCGCAGATAGCAGACGGCGATGACTAGCAACAGCGGGAAATTTAGCGACATA 553 Query 70 GGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTG 129 ||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||| ||| Sbjct 552 GGACCTAGCTATCCAACCTGAGCACGGCGAGGAAGGCTTCTT-GTGGAATTTCCACATTG 494 Query 130 CCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGG 189 ||||| | ||||||||||| ||||||||||| |||||||| |||||||| ||||||| Sbjct 493 CCCACCTGTTTCATGCGTTTCTTACCGGCCTTCTGCTTCTCCAGCAGCTTCTTCTTACGG 434 Query 190 CTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTC 249 || ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct 433 CTGACGTCACCGCCGTAGCACTTGGCCAGTACGTTCTTTCTGAGCGCCTTGACGGTTGTC 374 Query 250 CGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 |||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 373 CGCGCAATGATCTGGCCGCCAATGGCTGCCTGGATCGCTACGTCG 329 >seq11603 Length=1239 Score = 311 bits (344), Expect = 1e-82 Identities = 246/294 (84%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 |||| || |||||| ||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 830 TCGAACAGGGCCAGGGCGCCACACACGGCGACGGCAATGACCAGCAACAGCGGGAAATTG 889 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 | |||||||| | | ||||||||| |||| || |||||||||||||| | ||||||| Sbjct 890 AATGACATAGGCCTCAGCTATCCAACTTGAGTACAGCAAGGAAGGCTTCCT-GTGGAATC 948 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 |||||||| ||||| |||||||||| || ||||||||||| |||||||| ||||||||| Sbjct 949 TCCACGTTCCCCACCTGCTTCATGCGCTTCTTACCGGCCTTCTGCTTCTCCAGCAGCTTG 1008 Query 181 CGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTG 240 ||||||||||| ||||| ||||||||||| |||||||| ||||||||||| | |||||| Sbjct 1009 CGCTTACGGCTCACGTCGCCGCCGTAGCACTTGGCCAGAACGTTCTTTCTCAATGCCTTG 1068 Query 241 ACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 || | ||| || || | |||||| ||||| ||||| ||||| ||||| || ||| Sbjct 1069 ACAGTGGTTCGTGCCACGATCTGGCCGCCGATGGCCGCCTGAATCGCCACATCG 1122 >seq16125 Length=868 Score = 158 bits (174), Expect = 2e-36 Identities = 155/199 (78%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || |||||||| || | | || | |||||| || | |||||||||| || || || Sbjct 673 GCCAGGAAGGCCTCCT-GAGGCACTTCCACCGAACCGATCTGCTTCATGCGCTTCTTGCC 615 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 ||||||||||||||| |||||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct 614 GGCCTTTTGCTTCTCCAGCAGCTTGCGCTTGCGGGTGATGTCGCCGCCATAGCACTTGGC 555 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| |||||||| | | |||||||||| ||| |||||||| | |||| ||||| Sbjct 554 CAGCACGTTCTTGCGCATGGCCTTGACGGTTTCCCGAGCAATGATGTTGGCGCCGATGGC 495 Query 276 GGCCTGGATCGCGACGTCG 294 ||||||||| || |||||| Sbjct 494 GGCCTGGATGGCCACGTCG 476 >seq17238 Length=807 Score = 149 bits (164), Expect = 1e-33 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 85 ACCTG-AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCAT 143 ||||| |||||||| |||||||| || | | ||||| |||||| |||||| ||||||| Sbjct 54 ACCTGCAGCACCGCGAGGAAGGCCTCCT-GCGGAATCTCCACGCGGCCCACCTGCTTCAT 112 Query 144 GCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCC 203 || || || || | || |||||||| || ||||| ||| ||||| | ||||| || Sbjct 113 CCGCTTCTTGCCCTCTTTCTGCTTCTCGAGGAGCTTCTTCTTGCGGCTGATATCACCACC 172 Query 204 GTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTG 263 ||||| |||||||| |||||||| | | |||||||| | | | || || |||||||| Sbjct 173 ATAGCACTTGGCCAGCACGTTCTTGCGCATCGCCTTGACCGTGCTGCGGGCGATGATCTG 232 Query 264 CCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 | | || | || ||||||||||| |||||| Sbjct 233 CGCCCCTACCGCCGCCTGGATCGCCACGTCG 263 >seq2697 Length=4615 Score = 143 bits (158), Expect = 4e-32 Identities = 152/199 (76%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || ||||| ||||| | | |||| |||||| || | ||||||||||||| || || Sbjct 3953 GCCAGGAACGCTTCCTGG-GGAACTTCCACCGAACCGATCTGCTTCATGCGTTTCTTGCC 4011 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 ||||| |||||||| || ||||||||||| ||| | | ||||||||| |||||||| || Sbjct 4012 TGCCTTCTGCTTCTCGAGAAGCTTGCGCTTGCGGGTGATGTCACCGCCATAGCATTTCGC 4071 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| |||||||| | || ||||||| || ||||| ||||| | | || ||||| Sbjct 4072 CAGCACGTTCTTGCGCAGGGCCTTGATGGTCTCGCGCGCGATGATGTTGGCACCGATGGC 4131 Query 276 GGCCTGGATCGCGACGTCG 294 |||||||| || |||||| Sbjct 4132 CGCCTGGATGGCCACGTCG 4150 >seq13603 Length=1050 Score = 113 bits (124), Expect = 8e-23 Identities = 145/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || ||||| ||||| | | || | || ||||| || || ||||||| || || ||||| Sbjct 595 GCGAGGAACGCTTCCT-GCGGCAGCTCGACGTTACCGACCTGCTTCATACGCTTCTTACC 537 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 | || ||||||| |||||||| ||||||||| ||||||||||| |||||||| || Sbjct 536 TTCTTTCTGCTTCTGGAGCAGCTTTTTCTTACGGCTGACGTCACCGCCATAGCATTTTGC 477 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| ||||| || | | || || | | || || ||||| || ||||||||| Sbjct 476 CAGAACGTTTTTACGCAACTGTTTCACCGTCGCACGGGCGATGATGTGGTTGCCAATGGC 417 Query 276 GGCCTGGATCGCGACGTCG 294 ||||| ||||| | |||| Sbjct 416 CGCCTGAATCGCAATGTCG 398 >seq26773 Length=444 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/128 (79%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCA-CTCGCTTCATGCGTT 148 ||| | |||| ||||||||| | | |||||||| || ||||| | || || |||||| | Sbjct 133 AGCGCGGCAATGAAGGCTTCCT-GAGGAATTTCAACCTTGCCGAACTGGCG-CATGCGCT 76 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || |||| ||||| || |||||||||||||| ||| | |||| |||||||||| Sbjct 75 TCTTGCCTTCCTTCTGCTTGTCCAGCAGCTTGCGCTTGCGGGTGGCGTCGCCGCCGTAGC 16 Query 209 ATTTGGCC 216 | |||||| Sbjct 15 ACTTGGCC 8 >seq687 Length=12420 Score = 77.0 bits (84), Expect = 5e-12 Identities = 135/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 93 ACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTT 152 ||||| | || ||||| | | |||||||| ||||| || || | |||| |||||||| Sbjct 1977 ACCGCCATAAAAGCTTCCT-GCGGAATTTCAACGTTTCCTACCTGTCTCATACGTTTTTT 1919 Query 153 ACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTT 212 ||| || || || || | |||||| ||||||||| | || || || || ||||| Sbjct 1918 ACCTTTTTTCTGTTTTTCCAACAGCTTTCGCTTACGGGAAATATCGCCACCATAACATTT 1859 Query 213 GGCCAGT-ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAA 271 | |||| |||| |||||| | || |||| | |||||||| || | | |||| Sbjct 1858 TG-CAGTAACGTCCTTTCTTAATGCTTTGATAGTTTCACGCGCAATAATTTTAGCCCCAA 1800 Query 272 TGGCGGCCTGGAT 284 | || ||||| || Sbjct 1799 TTGCCGCCTGAAT 1787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838102041024