Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq4208 132 1e-28 seq4650 125 2e-26 seq5240 109 1e-21 >seq4208 Length=3169 Score = 132 bits (146), Expect = 1e-28 Identities = 197/282 (70%), Gaps = 22/282 (8%) Strand=Plus/Plus Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||| || ||| ||| ||| | |||||||| || |||||| || Sbjct 1143 GCCTGGGGCAGCATGGAAGTGTCATAGGAGACGTTGAGCATGCGGGCAGTGTTCTCCGCA 1202 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATAC----T 238 |||||| ||| || |||||||| ||||||| | || || | | ||||| | | Sbjct 1203 CGCTCCGTGTAGCGGGACATCCAGTACAGATGATCGGCAGTACGGCTGAGCATTCAATGT 1262 Query 239 CAGCCCTC--------CACC----------ACCCAGGTGTCCTTGGTTCCACCGCCTTGC 280 | ||||| |||| ||||||||||||||||| || ||||| || Sbjct 1263 CCTCCCTCGTTTGACTCACCGGCCCCGAGCACCCAGGTGTCCTTGGTGCCGCCGCCCTGT 1322 Query 281 GACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACC 340 || || ||||| ||||||||||||||||| ||||||||||| || | ||| |||| |||| Sbjct 1323 GATGAATTGACCACCAGCGAGCCTTCCTTGAGCGCCACGCGCGTGAGGCCGCCGGCCACC 1382 Query 341 AGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 | ||| | ||||| |||||||||||| |||| |||| Sbjct 1383 ATGCGTACCTGATTGCCGCTGAGCACGAAGGGACGCAGGTCG 1424 >seq4650 Length=2900 Score = 125 bits (138), Expect = 2e-26 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 251 ACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTC 310 ||||||||||||||||| || ||||| || ||||| |||||||||| |||||||||||| Sbjct 1096 ACCCAGGTGTCCTTGGTGCCGCCGCCCTGGGACGAATTGACGACCAACGAGCCTTCCTTG 1037 Query 311 AGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAG 370 ||||||||||| || | ||| |||| |||| | | || ||||||||||||||| Sbjct 1036 AGCGCCACGCGCGTGAGGCCGCCGGCGACCATCTGCACCTTCTGGCCCGAGAGCACGAAC 977 Query 371 GGTCGCAAGTCG 382 || |||| |||| Sbjct 976 GGGCGCAGGTCG 965 >seq5240 Length=2628 Score = 109 bits (120), Expect = 1e-21 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245 TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCT 304 || ||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| Sbjct 1007 TCGACCACCCAGGTGTCCTTGGCGCCACCGCCCTGCGACGAATTGACCACCAGCGAGCCC 1066 Query 305 TCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGC 364 | | || ||||||||| |||| || |||| | | || |||| || ||| ||| Sbjct 1067 TTCACCATCGCCACGCGCGTCAGCCCGCCGGTGGTGACGTAAGTGTCCTGGCGCGACAGC 1126 Query 365 ACGAAGGGTCGCAAGTCG 382 ||||| || |||| |||| Sbjct 1127 ACGAACGGACGCAGGTCG 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119601963200