Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002172.1 Length=233 Score E Sequences producing significant alignments: (Bits) Value seq23936 179 5e-43 >seq23936 Length=529 Score = 179 bits (198), Expect = 5e-43 Identities = 186/239 (78%), Gaps = 16/239 (7%) Strand=Plus/Minus Query 2 CGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTT----C 57 || |||||||| ||||||||||||||||| ||||| | | |||||| | | |||| | Sbjct 525 CGGGTGGTCAAACCGACCTTCGTGCGCCACGGCAAGATCCTGATCTGAACAATTTATAAC 466 Query 58 CGGCAGGCCAATGGCCGCTGACATTACTTCTTGAGGA---CACAGACTATGAGCGATATC 114 |||| ||| | ||||||| | | ||||| || |||| |||||| ||||| Sbjct 465 CGGCGGGCGTA---CCGCTGAGCCAA----TCGAGGAATTCA-AGAC-ATGAGCAATATC 415 Query 115 CCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACC 174 || ||||| ||||||||||||||||| || || ||||| || |||||||| ||||||| Sbjct 414 CCCGCCGAACTGCGTTTTGCCGAAAGCCATGAGTGGGCTCGCCTGGAAGCCGACGGCAGT 355 Query 175 GTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233 ||||||||||||||| ||| || |||||| |||| ||||| ||||||||| | ||||| Sbjct 354 GTGACCGTGGGTATCAGCGATCACGCCCAGCAAGCCTTGGGTGATGTGGTGTTCGTCGA 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646177454782