Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq20578 279 1e-72 seq14004 210 5e-52 seq25714 190 5e-46 seq16614 163 7e-38 seq29971 150 4e-34 seq16444 123 6e-26 seq35435 120 7e-25 seq3326 118 3e-24 seq15072 109 1e-21 seq12548 86.0 2e-14 seq17302 77.0 8e-12 >seq20578 Length=651 Score = 279 bits (308), Expect = 1e-72 Identities = 252/314 (80%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 102 GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC 161 |||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||| Sbjct 1 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGC 60 Query 162 CTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGA 221 || |||| ||| ||||||| |||||||||||||| | |||| ||||| ||||| |||| Sbjct 61 CTTGGTGAGCCTTTACCCCACCAACTAGCTAATCTGACATGGGCTCATCTGATAGCGAGA 120 Query 222 GGCCCGAAGGTCCCCCTCTTT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCA 280 || |||||| |||||| |||| | | |||| |||||||||||||| | |||| | Sbjct 121 GGTCCGAAGATCCCCCCCTTTCCCCCGTAGGACG-TATGCGGTATTAGCGTTCCTTTCGA 179 Query 281 GTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTC 340 ||| |||||| | | ||||||| |||||| ||||||||||||| |||| || | Sbjct 180 AACGTTGTCCCCCACTACCAGGCAGATTCCCATGTATTACTCACCCGTTCGCCGCTGCTT 239 Query 341 AGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCA 400 | | |||||||| | || |||| ||||||||||||||||||||||||||||| Sbjct 240 CG----GTAGCAAGCTACCTC----AACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCA 291 Query 401 GCGTTCAATCTGAG 414 |||||||||||||| Sbjct 292 GCGTTCAATCTGAG 305 >seq14004 Length=1018 Score = 210 bits (232), Expect = 5e-52 Identities = 162/191 (85%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| | || || | ||||||||||||||| |||| ||| || |||| Sbjct 381 TTTACAACCCATAGGGCAGTCGTCCTGCACGCGGCATGGCTGGTTCAGACTTCCGTCCAT 322 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 321 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 262 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| || |||||||||||| | |||| |||||||||| |||||||| |||||||||| Sbjct 261 TGGGGGGCCATCCTCTCAGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCC 202 Query 184 AACTAGCTAAT 194 ||||||||||| Sbjct 201 AACTAGCTAAT 191 >seq25714 Length=474 Score = 190 bits (210), Expect = 5e-46 Identities = 156/190 (82%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| |||||| || || || | |||||||| | || ||||||| |||| |||||| Sbjct 208 TTTACAATCCGAAGACCGTCATCCTCCACGCGGCGTTGCACCATCAGGGTTGCCCCCATT 267 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| | ||||| | ||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 268 GTGAATTATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGTGT 327 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| || |||||||||||||| || |||| |||| |||| ||| ||||| | ||| Sbjct 328 GCCTGATCGTCCTCTCAGACCAGGTACCCGTCGTAGCCTTGGTGAGCCGTTACCTCACCA 387 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 388 ACAAGCTGAT 397 >seq16614 Length=840 Score = 163 bits (180), Expect = 7e-38 Identities = 206/284 (73%), Gaps = 32/284 (11%) Strand=Plus/Plus Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||| Sbjct 3 TCATCCTCTCAGACCAGCTAAGGATCGTCGCCTTGGTGGGCCTTTACCCCACCAACTAGC 62 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 |||||| | ||| |||||| | | ||| || ||||||||||| | Sbjct 63 TAATCCTACGCGGGCTCATCC--TTG-----GGCGATAA-------ATCTTTGGTCTTAC 108 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 ||| | || |||||||||| | |||| | ||||| || || ||||| |||| Sbjct 109 GACATCATCCGGTATTAGCAGTCATTTCTAACTGTTATTCCGAACCCAAGGGCAGATTCC 168 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 || | |||| ||||||| ||||||| ||| |||| ||| || Sbjct 169 CACGCGTTACGCACCCGTGCGCCACT--------AAGGCCGAAGC--CTT--------CG 210 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 211 TTCGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCATTCTGAG 254 >seq29971 Length=359 Score = 150 bits (166), Expect = 4e-34 Identities = 135/165 (82%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 ||||| ||||||||||||| |||||||| |||||||||| | | ||||||| |||| Sbjct 339 GACGT-ATGCGGTATTAGCGTCCGTTTCCGAGCGTTATCCCCCACTACCAGGCAGATTCC 281 Query 311 CAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACC 369 || ||||||||||||||||||| || ||| || |||||||| || | | || Sbjct 280 TAGGCATTACTCACCCGTCCGCCGCTGAATCA--AGAGAAGCAAGCTTCTGTC---TTCC 226 Query 370 GTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 GCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 181 >seq16444 Length=849 Score = 123 bits (136), Expect = 6e-26 Identities = 232/333 (70%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 92 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAG 151 |||||||||||| |||||||||||| ||||||||| | | |||||||||| | |||| Sbjct 1 GTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAG 60 Query 152 GGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCC 211 |||||||||| |||||||| ||||||| ||||||||||||| || | | ||||| Sbjct 61 ACATCGTCGCCTTGGTGGGCCGTTACCCCACCAACTAGCTAATGTCACGCGAGCCCATCC 120 Query 212 ----GATAGTGAGAGGCCCGAAGGTCCCCCT-CTTTGGTCTTGCGACGTTATGCGGTATT 266 || | | || | | || | | ||| || |||||||||| || Sbjct 121 ATATCCTATAAATATTTAACAACGCCTCCATGCGAAGGTGATG---TGTTATGCGGTCTT 177 Query 267 AGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACC 325 | | |||| || ||||||||| |||| ||| | || | |||| |||| Sbjct 178 AATCCGGATTTCTCCGGGCTATCCCCCTGATATGGGCAGGTTGCTCACGCGTTACGCACC 237 Query 326 CGTCCGCCACTCGTCA--GCGAAGCAGCAAGCTGCTTC--CTGTTACCGTTCGACTTGCA 381 ||| |||||||| ||| | |||||||| || | | | |||| ||||||||| Sbjct 238 CGTGCGCCACTC-TCACCTCCTTCGAGCAAGCT-CTCCAGAGGATCCCGTCCGACTTGCA 295 Query 382 TGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||| |||||||| ||||| Sbjct 296 TGTATTAGGCCTGCCGCTAGCGTTCATCCTGAG 328 >seq35435 Length=631 Score = 120 bits (132), Expect = 7e-25 Identities = 158/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 203 GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT-TGCGACGTTATGCG 261 || ||||| ||| | ||| |||||| ||||| |||| | | ||||| ||||| Sbjct 4 GGCTCATCTATTAGCGCAAGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGT-ATGCG 62 Query 262 GTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACT 321 |||||||| | |||| | ||| |||||| | | |||||| |||| | ||||||| Sbjct 63 GTATTAGCATTCCTTTCGAAATGTTGTCCCCCACTAATAGGCAGATTCCTAAGCATTACT 122 Query 322 CACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC-CTGTTACCGTTCGACTTGC 380 |||||||||||| || || || |||||| | || || ||| ||||||||| Sbjct 123 CACCCGTCCGCCGCTA---AGTGATAGTGCAAGCACCATCACT----CCGCTCGACTTGC 175 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| ||||||||||||||||||||||||| Sbjct 176 ATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 209 >seq3326 Length=3886 Score = 118 bits (130), Expect = 3e-24 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||| ||| ||| ||| || |||| |||| |||| ||| || Sbjct 2369 CTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 2310 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 2309 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 2251 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 2250 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACGAC 2191 Query 183 CAACTA-GCTAATC 195 |||||| |||||| Sbjct 2190 CAACTACCCTAATC 2177 >seq15072 Length=938 Score = 109 bits (120), Expect = 1e-21 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| Sbjct 1 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 60 Query 182 CCAACTAGCTAATCC 196 ||||||||||||||| Sbjct 61 CCAACTAGCTAATCC 75 >seq12548 Length=1145 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAC 376 |||| ||||||| |||| || ||| ||| |||||||| |||| |||| ||||| Sbjct 932 TTACGCACCCGTGCGCCGGTC-TCA---AAGGAGCAAGCTCCTTC----TACCCCTCGAC 881 Query 377 TTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||| |||||||| ||||| Sbjct 880 TTGCATGTGTTAGGCCTGCCGCTAGCGTTCATCCTGAG 843 >seq17302 Length=804 Score = 77.0 bits (84), Expect = 8e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTT 55 ||||||||||||||||||||| ||| ||||||||||||||| ||||||||| Sbjct 52 CTTTACAACCCGAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221965571264