Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq25714 233 6e-59 seq3326 232 2e-58 seq14004 224 3e-56 seq17302 219 1e-54 seq20578 114 4e-23 seq12548 109 2e-21 seq16444 100 9e-19 seq19869 96.9 1e-17 seq15072 96.9 1e-17 seq16614 80.6 8e-13 >seq25714 Length=474 Score = 233 bits (258), Expect = 6e-59 Identities = 270/366 (74%), Gaps = 26/366 (7%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| | || |||| |||||| ||||||||||| |||||||| |||| ||| | | Sbjct 405 CGCGCCCTATCAGCTTGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTACCTGGT 346 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| | |||| |||||||||||||||||||| || |||||||| ||||| Sbjct 345 CTGAGAGGACGATCAGGCACACTGGAACTGAGACACGGTCCAGACACCTACGGGTGGCAG 286 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||| | ||||| | ||||||||| || ||||||| ||||||||||||| ||||| Sbjct 285 CAGTCGAGAATAATTCACAATGGGGGCAACCCTGATGGTGCAACGCCGCGTGGAGGATGA 226 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTC---AAGGAAG------------ATA------ 378 || |||||| | ||||| ||||| || || ||| ||| Sbjct 225 CGGTCTTCGGATTGTAAACTCCTGTCATCCGGGAGTAAGACCTGGCTGTGAATAGCAGAC 166 Query 379 ----ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| |||| || ||||||| ||||||||| ||||||||||||||||||||| Sbjct 165 AGGGTTGATAGTACCGGAAGAGGAAGGGACGGCTAACTTCGTGCCAGCAGCCGCGGTAAT 106 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCT 494 ||| ||| | |||||| | |||||| ||| |||||||||||| ||||||| || | Sbjct 105 ACGAAGGTCCCGAGCGTTGTTCGGAATCACT-GGGCGTAAAGGGAGCGTAGGCGGCGTGG 47 Query 495 TAAGTC 500 |||||| Sbjct 46 TAAGTC 41 >seq3326 Length=3886 Score = 232 bits (256), Expect = 2e-58 Identities = 258/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 167 GATTAGC-TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| |||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 2177 GATTAGGGTAGTTGGTCGTTTAAAAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 2236 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 2237 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 2295 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||||||| Sbjct 2296 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGAAGGCTA 2355 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 2356 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 2415 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 2416 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 2474 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || ||||||||||| |||||| Sbjct 2475 A-TTAGGCGTAAAGAGTTTGTAGGTGGTTTATTAAGT 2510 >seq14004 Length=1018 Score = 224 bits (248), Expect = 3e-56 Identities = 267/361 (74%), Gaps = 22/361 (6%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 184 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 243 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| || | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 244 TGAGAGGATGGCCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 303 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA- 339 ||| ||||||||| |||||| | ||| |||| |||| | |||||||| || || Sbjct 304 AGTAAGGAATATTGGTCAATGGACGGAAGTCTGAACCAGCCATGCCGCGTGCAGGACGAC 363 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA------------------AGATA-AT 380 | ||| |||| ||||| || | || |||| ||||| | Sbjct 364 TGCCCTATGGGTTGTAAACTGCTTTTGTCGAGGAATAAACCTATCTACGTGTAGATAGCT 423 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 || ||||| || || ||| ||||||||| |||||||||||||||||||||||| || Sbjct 424 GAACGTACTCGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 483 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT-TTCTTAAGT 499 | | ||||||||||||| ||| | ||| ||||||||||||||| ||| | |||||| Sbjct 484 GATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGTCCTGTTAAGT 542 Query 500 C 500 | Sbjct 543 C 543 >seq17302 Length=804 Score = 219 bits (242), Expect = 1e-54 Identities = 168/195 (86%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCC 366 ||||||||| |||| | |||||||||| ||||||||||||||||| |||||||||| || Sbjct 1 AAGCCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCTTCGGGTTGTAAAGCTCTTTCG 60 Query 367 TCAAGGAAGATAATGACGGTACT-TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGC 425 | || ||| ||||||||| | ||| || |||||||||||||||| |||||||||||| Sbjct 61 CACACGACGATGATGACGGTAGTGTGA-GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGC 119 Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 |||||||||||| |||||||||||||| | |||||||||| |||||||||||| |||||| Sbjct 120 CGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACT-GGGCGTAAAGGGCGCGTAG 178 Query 486 GTGGTTTCTTAAGTC 500 | || || | ||||| Sbjct 179 GCGGCTTATCAAGTC 193 >seq20578 Length=651 Score = 114 bits (126), Expect = 4e-23 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| |||| ||||||||||||||| ||| | | ||| Sbjct 98 GTCAGATTAGCTAGTTGGTGGGGTAAAGGCTCACCAAGGCGACGATCTGTAACTGGTCTG 39 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 ||||| ||||| | |||| ||||||||||||||||||| Sbjct 38 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCC 1 >seq12548 Length=1145 Score = 109 bits (120), Expect = 2e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||| ||||||||||||||||||||||||||||||||||| | ||| |||| | || Sbjct 1051 GCGTCCCATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCTATGATGGGTAGGGGTCC 1110 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACAC 255 |||||||| |||| ||||| ||| |||||||||| Sbjct 1111 TGAGAGGGAGATCCCCCACACTGGTACTGAGACAC 1145 >seq16444 Length=849 Score = 100 bits (110), Expect = 9e-19 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 151 GGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCA 210 |||| | | ||||| |||||||||||||| ||||||||| |||||||||||||| Sbjct 120 GGATGGGCTCGCGTGACATTAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGATGT 61 Query 211 GTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270 ||| | |||||||| ||| ||||| ||| |||||||||||| ||| |||||||| Sbjct 60 CTAGGGGCTCTGAGAGGAGAATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTAC 1 >seq19869 Length=681 Score = 96.9 bits (106), Expect = 1e-17 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||| ||| ||| || ||||||||||| Sbjct 574 AAGCATCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGATGCAAGCGTTATCCG 515 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | ||| | ||| ||||||||||||||| || | |||||| Sbjct 514 G-ATTCATTGGGTTTAAAGGGTGCGTAGGCGGACTTGTAAGTC 473 >seq15072 Length=938 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| | ||||||| ||||||||||||||| ||||| ||| |||||||||||||||| Sbjct 91 AGGATTGGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATC 32 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACA 240 |||| | |||||||| ||||| |||||| Sbjct 31 CATAGCTGGTCTGAGAGGATGATCAGCCACA 1 >seq16614 Length=840 Score = 80.6 bits (88), Expect = 8e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||| Sbjct 84 AGGATGAGCCCGCGTAGGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCGACGATC 25 Query 210 AGTAGCCGACCTGAGAGGGTGATC 233 |||| | |||||||| ||||| Sbjct 24 CTTAGCTGGTCTGAGAGGATGATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497067767936