Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq17302 430 3e-118 seq14004 266 8e-69 seq19869 260 3e-67 seq33584 248 2e-63 seq33948 233 5e-59 seq23303 230 6e-58 seq29677 224 2e-56 seq3326 167 6e-39 seq25714 143 6e-32 seq598 77.0 8e-12 >seq17302 Length=804 Score = 430 bits (476), Expect = 3e-118 Identities = 336/400 (84%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 88 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 147 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||||| ||||||| || || | ||||||| ||||||| | Sbjct 148 TTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGCTTATCAAGTCAGGCGTGAAAGCCC 207 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 |||| |||| || ||||| |||| |||| ||||||||| | |||| || | ||| Sbjct 208 CGGGCTTAACCTGGGAACTGCGCTTGAGACTGGTAGGCTAGAGTACCGGAGAGGTAGGTG 267 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 268 GAATTCCCAGTGTAGAGGTGAAATTCGTAGATATTGGGAAGAACACCAGTGGCGAAGGCG 327 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || | |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 328 GCCTACTGGACGGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 387 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||| |||||||||| |||| || |||| | | || || || Sbjct 388 ACCCTGGTAGTCCACGCTGTAAACGATGTCGGCTAGACGTTGGGGTTC-TTAGAACTTCG 446 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| |||| || ||||||||||| Sbjct 447 GTGTCGCAGCTAACGCATTAAGCCGACCGCCTGGGGAGTA 486 >seq14004 Length=1018 Score = 266 bits (294), Expect = 8e-69 Identities = 308/412 (75%), Gaps = 11/412 (3%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 |||| || || ||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 429 TACTCGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 488 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTT-TCTTAAGTCAGAGG 119 ||||||||||||| ||| |||| ||||||||||||||| ||| | ||||||||| | Sbjct 489 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCTGTTAAGTCAGGAG 548 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 |||||| | ||||||| | | ||| |||| |||| || || || |||| || Sbjct 549 TGAAAGACGGCAGCTCAACTATCGCAGTGCCCTTGATACTGAAGAACTTGAATGCACTAG 608 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 | | | ||||| ||||||||||||||| ||||||| ||||||| | Sbjct 609 AAGAAGGCGGAATGAGACAAGTAGCGGTGAAATGCATAGATATGTCTCAGAACACCGATT 668 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| |||| || | | | |||| ||||||| |||||||||||||| |||||| Sbjct 669 GCGAAGGCAGCTTACTATGGTCTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACA 728 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 ||||||||||||||||||||||||||| ||||||||||| ||| | ||| || | ||| Sbjct 729 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAACACTCGCTGTTGGCG---ATA 785 Query 360 ---AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | | | | ||| || || ||||| |||||||||||||||| Sbjct 786 CACAGT----CAGCGGCTAAGCGAAAGCGTTAAGTGTTCCACCTGGGGAGTA 833 >seq19869 Length=681 Score = 260 bits (288), Expect = 3e-67 Identities = 298/397 (75%), Gaps = 5/397 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||||||||||||| ||| ||| || ||||||||||| Sbjct 574 AAGCATCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGATGCAAGCGTTATCCG 515 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG- 131 || | | |||| ||||||||||||||| || | |||||||| ||||||| || | Sbjct 514 GATTCATTGGGTTTAAAGGGTGCGTAGGCGGACTTGTAAGTCAGTGGTGAAAT-CTCTCA 456 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||| ||| | ||||| |||| |||||||| ||||||| || | | | |||| Sbjct 455 GCTTAACTGAGAAACTGCCATTGATACTGCAGGTCTAGAGTATAGATGACGTTGGCGGAA 396 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 | ||||| |||||||| | ||||||| ||||||| | |||||||| ||| Sbjct 395 TATGACATGTAGTGGTGAAATACTTAGATATGTCATAGAACACCGATTGCGAAGGCAGCT 336 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 | ||| |||||||| ||||||| |||||| | ||||| |||||||||||||||||| Sbjct 335 AACGAAACTATAACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAGGATTAGATACC 276 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTG 371 |||||||||| | ||||||||||||| |||| | ||| || | ||| | | | | Sbjct 275 CTGGTAGTCCGCACCGTAAACGATGATTACTCGTTGTTGGCG---ATATGACAGTCAGCG 219 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || || ||||||| ||||||||||||||| Sbjct 218 ACCAAGCGAAAGCGATAAGTAATCCACCTGGGGAGTA 182 >seq33584 Length=265 Score = 248 bits (274), Expect = 2e-63 Identities = 214/265 (81%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 47 AATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||| |||| || ||||||| |||||||||||||||||||| | |||||||||||| Sbjct 265 AATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGTAGGTGGTTT 206 Query 107 CTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGC 166 ||||| || |||||| | ||||||||| || ||||| || ||||| || Sbjct 205 GTTAAGCTAGCTGTGAAATCCCCGGGCTCAACCTGGGCACTGCAGTTAGAACTGGCAAGC 146 Query 167 TAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGG 226 |||||| | || || |||||||||| ||||||||||||||||||||||||| || Sbjct 145 TAGAGTAGGGTAGAGGGGTGTGGAATTCCAGGTGTAGCGGTGAAATGCGTAGATATCTGG 86 Query 227 AGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCG 286 ||||||| |||||||||||||| | ||||||| ||||||||||||| |||||||| Sbjct 85 AGGAACATCAGTGGCGAAGGCGACACCCTGGACTCATACTGACACTGAGGTGCGAAAGCG 26 Query 287 TGGGGAGCAAACAGGATTAGATACC 311 ||||||||||||||||||||||||| Sbjct 25 TGGGGAGCAAACAGGATTAGATACC 1 >seq33948 Length=254 Score = 233 bits (258), Expect = 5e-59 Identities = 204/254 (80%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 55 GGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 ||| || ||||||| |||||||||||||||||||| ||||||||||||| ||||||| Sbjct 254 GGGTGCAAGCGTTACTCGGAATTACTGGGCGTAAAGCGTGCGTAGGTGGTGGTTTAAGTC 195 Query 115 AGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGC 174 | ||||||| | ||||||||| || | ||| | || |||| | |||||||| Sbjct 194 TGCTGTGAAAGCCCTGGGCTCAACCTGGGAATTGCAGTGGATACTGGATCACTAGAGTGT 135 Query 175 AGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234 | || || | | |||||| || ||||||| |||||||||||||| || || ||||||| Sbjct 134 GGTAGAGGGATGCGGAATTTCTGGTGTAGCAGTGAAATGCGTAGAGATCAGAAGGAACAT 75 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 | |||||||||||||| | |||| | |||||||||||||| |||||||||||||||| Sbjct 74 CCGTGGCGAAGGCGGCATCCTGGGCCAACACTGACACTGAGGCACGAAAGCGTGGGGAGC 15 Query 295 AAACAGGATTAGAT 308 |||||||||||||| Sbjct 14 AAACAGGATTAGAT 1 >seq23303 Length=550 Score = 230 bits (254), Expect = 6e-58 Identities = 271/364 (74%), Gaps = 11/364 (3%) Strand=Plus/Minus Query 49 TACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCT 108 |||| |||| || ||||||||||||| |||||||| ||||||| ||| ||| || | Sbjct 550 TACGGAGGGTGCAAGCGTTATCCGGATTTACTGGGTTTAAAGGGAGCGCAGGCGGGCTGA 491 Query 109 TAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTA 168 |||||||| ||||||| | ||| ||| || ||||| |||| ||| || || Sbjct 490 TAAGTCAGTGGTGAAATCCCCGAGCTTAACTTGGGAACTGCCATTGATACTATTGGTCTT 431 Query 169 GAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAG 228 || || | | || ||| ||||| | |||||||||||||||| ||||||| | Sbjct 430 GAATGTTGTGGAGGTAAGCGGAATATGTCATGTAGCGGTGAAATGCATAGATATGACATA 371 Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 ||||||| | |||||||| |||| || | | |||| |||||||||||||||||| Sbjct 370 GAACACCTATTGCGAAGGCAGCTTACTACGCAAATATTGACGCTGAGGCTCGAAAGCGTG 311 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||| ||||||||||||||||||||||||||||||||| |||||||||| |||| | || Sbjct 310 GGGATCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGATTACTCGACGT 251 Query 349 CGGGGCGCATA----AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGG 404 | ||| ||| ||||| | | | ||| || ||| |||||| |||||||||| Sbjct 250 --GCGCG-ATATTACAGTGC----GCGTCTGAGCGAAAGCATTAAGTAATCCACCTGGGA 198 Query 405 AGTA 408 |||| Sbjct 197 AGTA 194 >seq29677 Length=366 Score = 224 bits (248), Expect = 2e-56 Identities = 258/345 (75%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 64 CGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAA 123 ||||||||||| ||| |||| ||||||||||||||| || | ||||||||| ||||| Sbjct 1 CGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTCTTTAAGTCAGGAGTGAA 60 Query 124 AGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 || | ||||||| | | ||| ||||| |||| || ||| || | || | | Sbjct 61 AGACGGCAGCTCAACTGTCGCAGTGCCTTTGATACTGAAGAGCTTGAATACACTTGAAGT 120 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | | ||||| ||||||||||||||| ||||||| |||||||| | |||| Sbjct 121 AGGCGGAATGAGACAAGTAGCGGTGAAATGCATAGATATGTCACAGAACACCAATTGCGA 180 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 |||| |||| || | || | |||| ||||||| |||||||||||||| |||||||||| Sbjct 181 AGGCAGCTTACTAAAGTGAGATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGAT 240 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 ||||||||||||||||||||||| ||||||||||| ||| | ||| || | ||| | Sbjct 241 TAGATACCCTGGTAGTCCACGCCCTAAACGATGAACACTCGATGTTGGCG---ATATACG 297 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | | ||| || || ||||| |||||||||||||||| Sbjct 298 GT-CAGCGTCTAAGCGAAAGCGTTAAGTGTTCCACCTGGGGAGTA 341 >seq3326 Length=3886 Score = 167 bits (184), Expect = 6e-39 Identities = 249/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 2397 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 2455 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | ||||||||| || ||||||||||| |||||| | Sbjct 2456 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTATTAAGTTGAAA 2515 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | || ||||||| | ||| |||||| || |||| | Sbjct 2516 AAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTTGAGTATAAAT 2575 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| |||| Sbjct 2576 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACCAA 2635 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 2636 AGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 2694 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || |||||||| |||| ||||||||| || ||||||||||| | ||| Sbjct 2695 ACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 2741 >seq25714 Length=474 Score = 143 bits (158), Expect = 6e-32 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 || ||||||| ||||||||| |||||||||||||||||||||||| ||| | |||| Sbjct 149 GAAGAGGAAGGGACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGTCCCGAGCG 90 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 || | |||||| ||||||||||||||| ||||||| || | ||||||||| |||||| Sbjct 89 TTGTTCGGAATCACTGGGCGTAAAGGGAGCGTAGGCGGCGTGGTAAGTCAGATGTGAAAT 30 Query 126 GCTATGGCTCAACCCCGGGACTGC 149 | ||||||||||||| ||||| Sbjct 29 CCCGGGGCTCAACCCCGGAACTGC 6 >seq598 Length=13668 Score = 77.0 bits (84), Expect = 8e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||| ||||| |||||||||||||||| ||||| |||| | ||||||||| | Sbjct 12723 AAGCACCGGTTAACTTAGTGCCAGCAGCCGCGGAAATACTGAGGGTGTTAGCGTTATACT 12664 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAG 99 | ||| |||||| ||||| | |||| Sbjct 12663 TATTTATTGGGCGCAAAGGATTTGTAG 12637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202772394752