Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq15772 499 6e-139 seq15329 306 7e-81 seq21545 248 2e-63 seq34654 228 2e-57 seq2775 178 2e-42 seq21710 168 1e-39 seq6457 132 9e-29 >seq15772 Length=893 Score = 499 bits (552), Expect = 6e-139 Identities = 296/309 (96%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 263 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 203 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||| Sbjct 202 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTTCATTTCCTTGTCCG 143 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 142 AAAGGTCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 83 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 82 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 23 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 22 CCCTTTGTA 14 >seq15329 Length=923 Score = 306 bits (338), Expect = 7e-81 Identities = 260/315 (83%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAG--CCAGGCCCGCTTTGGC---GGGTCGCCGGCTT 74 || |||||||| |||| |||||||| | | | |||||| | | || || ||| Sbjct 878 GAACGAGACCTCGACCTACTAAATAGTTCAACGTAGGCTTTGCCTATGTGT-GCA--CTT 822 Query 75 CTTAGAGGGACTATCGGCTCAA-GCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 |||||||||||| | || |||| ||| | ||||||| ||||||||||||||||||||||| Sbjct 821 CTTAGAGGGACTGTTGGTTCAAAGCCAAAGGAAGTTCGAGGCAATAACAGGTCTGTGATG 762 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 ||||||||||||||||||||||||||||||||||||| | | || |||| | | |||| Sbjct 761 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATACATGCATCGAGCTTACAACCT 702 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 |||| || ||| |||||||||||| | ||| | | |||||||||||||||| |||| || Sbjct 701 TGGCTGGGAGGCCTGGGTAATCTTTTCAAATTGTATCGTGCTGGGGATAGATTATTGTAA 642 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 ||||| ||||||||||||||| ||||||||||||| ||||||| | ||| |||||||| Sbjct 641 TTATTAATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCACTGATTACG 582 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 581 TCCCTGCCCTTTGTA 567 >seq21545 Length=613 Score = 248 bits (274), Expect = 2e-63 Identities = 215/262 (82%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | | ||||| | ||||||||||||||||||||||||||||| Sbjct 558 CTTCTTAGAGGGACTTTGTGTGCAAGCATAAGGAAGTTTGAGGCAATAACAGGTCTGTGA 499 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG-TTCA--T 188 ||||||||||||| ||||||||||||||||||||||||||| | |||| || || | | Sbjct 498 TGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGACATATGCAACAAGCTTTATTT 439 Query 189 CACCTTGGCCGGAA-GGTCTGGGTAATCTTGT-TAAACTCTGTCGTGCTGGGGATAGAGC 246 ||| ||||| ||| |||||||||||| ||| | ||||||||| |||||||| | Sbjct 438 TTCCTGTCTCGGAAGGGTTCGGGTAATCTTGTATAATGTGTGTCGTGCTAGGGATAGATC 379 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||| |||||| | |||| ||| |||||| |||||||||| ||||||||| | | | Sbjct 378 TTTGGAATTATAGATCTTGAACAAGGAATTCCTAGTAAGCATAAGTCATCAGCTTGTGCT 319 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 318 GATTACGTCCCTGCCCTTTGTA 297 >seq34654 Length=231 Score = 228 bits (252), Expect = 2e-57 Identities = 175/206 (85%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCAGCCAACGAG 60 Query 184 TTCATCACCTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 | || | ||| || ||| ||| |||||| | ||| | ||||| |||||||| Sbjct 61 CTTTTCTTCCTGGTTCGAGAGGATCGGGAAATCTTTTCAAATTGCATCGTGATGGGGATA 120 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||||||||| ||||||||||||||| ||||||||||||||||||||| | || Sbjct 121 GACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGTGTCATCAACTCG 180 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||| Sbjct 181 TGTTGACTACGTCCCTGCCCTTTGTA 206 >seq2775 Length=4502 Score = 178 bits (196), Expect = 2e-42 Identities = 164/201 (82%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG-TTCATCAC 191 |||||||||||| ||||||||||||||||||||||||||| | |||| || || ||| Sbjct 1 GCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGACACATGCAACAAGCTTTATCTT 60 Query 192 -CTTGGC-CGGAAG-GTCTGGGTAATCTTGT-TAAACTCTGTCGTGCTGGGGATAGAGCA 247 | || | |||||| || |||||||||||| ||| | ||||||||| |||||||| | Sbjct 61 TCCTGACTCGGAAGAGTACGGGTAATCTTGTATAATGTATGTCGTGCTAGGGATAGATCT 120 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||||| | |||| ||| |||||| |||||||||| ||||||||| | | || Sbjct 121 TTGGAATTATAGATCTTGAACAAGGAATTCCTAGTAAGCATAAGTCATCAGCTTGTGCTG 180 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 181 ATTACGTCCCTGCCCTTTGTA 201 >seq21710 Length=607 Score = 168 bits (186), Expect = 1e-39 Identities = 117/133 (88%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||| ||||| | |||||||| | ||| |||||||||| Sbjct 133 GAACGAGACCTTAACCTACTAACTAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 74 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 73 AGGGACTCTCGGTGCAAGCCGAGGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 14 Query 140 GATGTTCTGGGCC 152 ||||||||||||| Sbjct 13 GATGTTCTGGGCC 1 >seq6457 Length=2181 Score = 132 bits (146), Expect = 9e-29 Identities = 172/237 (73%), Gaps = 13/237 (5%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| || |||| |||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct 1932 GGAAGATTTAGGCCATAACAGGTCTGTGATGCTCTTAGATGTCCTGGGCTGCACGCGTAC 1991 Query 163 TACACTGACAGAGCCAACGAG----------TTCATCACCTTGGCCGGA-AGGTCTGGGT 211 |||| | || | ||| |||| || | | |||| || | ||| |||| Sbjct 1992 TACAATAACGGTACCAGCGAGCGCTATGGTTTTTAACCCCTTATCCTAATAGGATTGGGA 2051 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 || ||| | |||| | || || ||||| ||| |||| || | ||| | |||||| Sbjct 2052 AAACTTTTCAAACACCGTTATGACAGGGATCGAGGATTGGAA--CATCCTCGTGAACGAG 2109 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||| | |||||| | | ||||||||||||||||| |||||| Sbjct 2110 GAATTCCTAGTAAGCGTGGTTCATCATACCACATTGATTACGTCCCTGCCTTTTGTA 2166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946863374592