Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2487 601 1e-169 seq2775 565 8e-159 seq8124 517 4e-144 seq26665 412 1e-112 seq17320 315 2e-83 seq19173 75.2 4e-11 seq17525 75.2 4e-11 >seq2487 Length=4953 Score = 601 bits (666), Expect = 1e-169 Identities = 460/540 (85%), Gaps = 17/540 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 954 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 1013 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||| |||||| ||||| || || | || Sbjct 1014 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCGCCTGACGATGTCTTCCACGTAGCTC 1073 Query 127 GGCCC-------GCGAAGGACCTTAACGCCAGAAAATGGT--CGGTGAAG---ACCAGTT 174 | || || ||| |||| | |||| ||| | | || | ||||| | Sbjct 1074 GCCCAAACAAATGCTCAGG--CTTACAACTAGAACTGGGTGACCGCGAGGCCAACCAGAT 1131 Query 175 CCG-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 | | |||| | ||||||||| ||| | || ||||||||||||||| || | | Sbjct 1132 GCTACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAG 1191 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| Sbjct 1192 C--CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCT 1249 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1250 CAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGC 1309 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1310 TAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAG 1369 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 1429 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1430 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1489 >seq2775 Length=4502 Score = 565 bits (626), Expect = 8e-159 Identities = 447/535 (84%), Gaps = 16/535 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | || ||||||||||||||||| Sbjct 3706 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTCACCATAGGACACCTGCGTTATC 3647 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||| | ||||||||||||||||||||||||||||| ||||| || | |||| Sbjct 3646 GTTTAACAGGTATGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCGCTTAGATC 3587 Query 127 GGCCCGCGAAGGA------CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT--TCCGC 178 | | | | | |||||| | |||| ||| || || | || | Sbjct 3586 AGTCGGATATAAAACCCAACCTTAAGTCTAGAACCAGGT-----AAACCCTGGACTCTAC 3532 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||| || ||||||||| | | | | |||||||| || || ||| | ||| Sbjct 3531 CTCACGGAATAAGTAAAATGGCAAAACGAGTAGTGGTTTTACAGGGTCGCTCAC---GCT 3475 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3474 CCCACTTAGGCTATACCTCATAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 3415 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 3414 GGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGAC 3355 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3354 AGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGAC 3295 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3294 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGGTT 3235 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 3234 GAATTTCTTCACTTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTCAACA 3180 >seq8124 Length=1774 Score = 517 bits (572), Expect = 4e-144 Identities = 295/301 (98%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 60 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 AACAGGGTCTTCTTTCCCCGCTGATTTCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 120 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 180 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 240 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 241 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCAT 300 Query 535 C 535 | Sbjct 301 C 301 >seq26665 Length=447 Score = 412 bits (456), Expect = 1e-112 Identities = 280/313 (89%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 140 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 199 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 200 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 259 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 260 GGCCCGCGAAGGACCTTAATACCAGAAGTTGGACG--TAAATCCAGCCCCGCTTCATTGA 317 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 318 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 374 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 375 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 434 Query 307 TTTCCCCGCTGAT 319 ||||||||||||| Sbjct 435 TTTCCCCGCTGAT 447 >seq17320 Length=803 Score = 315 bits (348), Expect = 2e-83 Identities = 311/394 (79%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 CCTTTGTACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 478 Query 106 ACAATGTCATCAACCCGGATCG-GCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTG 164 | |||| || | | |||| | | |||| || || ||||||| || Sbjct 479 GCGATGTTCTCCATC--GATCATGAACTCGAATTCTTTTTAC--CAGAAAAGTGTATCAC 534 Query 165 AAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACT 223 | || |||| ||| || | | |||| || ||| |||||| ||||||||||| || | Sbjct 535 TACACTCGTTCT-CTT-ATGAAGTTAGTAGAATAACAATAAGGAGTAGTGGTATTACATT 592 Query 224 TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 ||||| | |||||||| ||| ||| ||||| || ||| |||| | | ||||| Sbjct 593 GACGCCGGA---GCTCCCACCTATACTATACCTCCTTCGTTATTCTACAACGCCAGACTA 649 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 650 GAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTAACCAACCCAAGCCCGTTCCCTTGGCT 709 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 || | ||||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 710 GTAGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTGTTCCATTCATGCGCGT 769 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||| ||||| |||||||||||||||||||||||| Sbjct 770 CACAAATTAAATGACGAGGCATTTGGCTACCTTA 803 >seq19173 Length=713 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| |||| Sbjct 492 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 433 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || || |||||||| |||||||||||| | |||| Sbjct 432 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT 387 >seq17525 Length=791 Score = 75.2 bits (82), Expect = 4e-11 Identities = 69/87 (79%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACT---CCCCACC 103 ||||||||| || |||| ||||||||||||||||||||||||||||| |||| || Sbjct 464 CTTAGGACATCTATTTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTTCCCCCCGCC 523 Query 104 TGACAATGTCATCAACCCGGATCGGCC 130 | || ||||| || || | |||||| Sbjct 524 TAACGATGTCTTCCACGTAGCTCGGCC 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634618866272