Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq14004 304 3e-80 seq25714 136 8e-30 seq16444 120 6e-25 seq19869 114 3e-23 seq3326 82.4 2e-13 seq20578 73.4 8e-11 >seq14004 Length=1018 Score = 304 bits (336), Expect = 3e-80 Identities = 286/360 (79%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCC-ACACG 59 ||||||||||||||||||||||||| ||||||| | |||| | || ||| | ||||| Sbjct 469 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTCGAGTACGTTCA-GCTATCTACACG 411 Query 60 TGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACG 119 | || | |||||||| | ||||| ||||||||| || ||| | || |||| |||| Sbjct 410 TAGATAGGTTTATTCCTCGACAAAAGCAGTTTACAACCCATAGGGCAGTCGTCCTGCACG 351 Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179 | | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 350 CGGCATGGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTA 291 Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239 ||||| ||| |||||||||||| ||| |||||||| || |||||||||| |||||| || Sbjct 290 GGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCTAGTCA 231 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTAC 299 |||| | || ||||||||||||||||||| |||| |||||| |||||| |||||| | Sbjct 230 TCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTTA 171 Query 300 ACCGATGAATCTTTAATGAT--GATACCATGCAATCTCATCATACCATCAGGTATTAATC 357 || || ||| ||| || || |||| |||| ||| | || || |||||||||| Sbjct 170 TCCCATAAATGTTTGATCATTGGATA--ATGCTATCCTGTGATTTTATGCGGTATTAATC 113 >seq25714 Length=474 Score = 136 bits (150), Expect = 8e-30 Identities = 204/286 (71%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGC-----TCCCA 55 ||||||||||||| ||||||||| ||| || | ||||| ||| | | | | Sbjct 114 GGCTGCTGGCACGAAGTTAGCCGTCCCTTCCTCTTCCGGTACTATCAACCCTGTCTGCTA 173 Query 56 --CACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 ||| | |||| ||| |||| || | || ||||||||||||| ||| || |||||| Sbjct 174 TTCACA-GCCAGGTCTTACTCCCGGATGACAGGAGTTTACAATCCGAAGA-CCGTCATCC 231 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 | ||||| | | || |||| | | |||||| | ||||| ||||||||| Sbjct 232 TCCACGCGGCGTTGCACCATCAGGGTTGCCCCCATTGTGAATTATTCTCGACTGCTGCCA 291 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 |||||||| || |||||||||||||||||||| |||| || | |||||||||| | Sbjct 292 CCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGTGTGCCTGATCGTCCTCTCAGACCAGG 351 Query 234 TATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || || |||||| || |||| ||||||||| | || || | || || Sbjct 352 TACCCGTCGTAGCCTTGGTGAGCCGTTACCTCACCAACAAGCTGAT 397 >seq16444 Length=849 Score = 120 bits (132), Expect = 6e-25 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177 GTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAT 236 |||||||| ||| |||||||||||| ||| ||||||||| |||||||||| |||||| Sbjct 1 GTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAG 60 Query 237 CCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 |||||| | || |||||||||||||||| || |||| |||||| |||| |||||| Sbjct 61 ACATCGTCGCCTTGGTGGGCCGTTACCCCACCAACTAGCTAATGTCACGCGAGCCCATC 119 >seq19869 Length=681 Score = 114 bits (126), Expect = 3e-23 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||||||||||||| || ||| ||| |||| |||||| Sbjct 546 GGCTGCTGGCACGAAGTTAGCCGATGCTTATTCTTACCATACTATCAACCTCCTACACGT 605 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||||| ||| || || ||||| ||||||||| || ||| || || |||| ||||| Sbjct 606 AGAAGGGTTTTCTCTGGTACAAAAGCAGTTTACAACCCATAGGGCCGTCTTCCTGCACGC 665 Query 121 TACTTGGCTGGTTCAG 136 | |||||||||||| Sbjct 666 GGCATGGCTGGTTCAG 681 >seq3326 Length=3886 Score = 82.4 bits (90), Expect = 2e-13 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||| | || ||||| ||||||| | | |||||||| |||| | | Sbjct 2390 TTTTCCTCCTTAATGAAAGAGCTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATT 2331 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| || ||| ||||| |||| ||||| ||||||||||| | ||||| Sbjct 2330 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTT 2272 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||||||||| || | | || ||| | | ||| || |||| Sbjct 2271 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 2212 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTA-CCTAAT 279 || ||| | | ||| | || |||| |||||| Sbjct 2211 CTTGGTAGTCTTTTAAACGACCAACTACCCTAAT 2178 >seq20578 Length=651 Score = 73.4 bits (80), Expect = 8e-11 Identities = 72/93 (77%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 ||||||||||||||||||| |||| || | |||||||||| | || ||||| | Sbjct 1 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGC 60 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || |||| ||| ||||||| || |||| ||||| Sbjct 61 CTTGGTGAGCCTTTACCCCACCAACTAGCTAAT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068420159168