Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2487 125 1e-26 seq27410 122 1e-25 seq2775 120 5e-25 seq16559 111 3e-22 seq21628 107 3e-21 >seq2487 Length=4953 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| ||||| | |||| || ||| Sbjct 628 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 571 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 570 GCCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 513 >seq27410 Length=427 Score = 122 bits (134), Expect = 1e-25 Identities = 136/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || ||||||||| || || || ||| || |||| Sbjct 158 GTACGAGAGGAACCGTTGA-TTCGGAC-AATTGGTTTATGGGGTTGGTTGAACAACCAGT 215 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||| ||||||||||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 216 GCCCCGAAGCTACCATCCGCAGGATAATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 275 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGT--CGGATACGAATAGGCTTCGGCCC 175 ||| | | || | ||||| || | || | || || |||||||||||||| Sbjct 276 GAAAGCGACGA-TATCTCCCGCTCTCTGTGTTCACGCGTAGCGATAGGCTTCGGCCC 331 >seq2775 Length=4502 Score = 120 bits (132), Expect = 5e-25 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | |||| | ||||||||| | ||| | |||| ||| ||| Sbjct 4030 GTACGAGAGGAACCCCTGAATC--GGATAATTGGTAAATACGGTTAGCTGAACAGCTAGT 4087 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 4088 GCCGTGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 4145 >seq16559 Length=843 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| ||||| || ||| || |||| Sbjct 816 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 759 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 758 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 699 Query 121 GAA 123 ||| Sbjct 698 GAA 696 >seq21628 Length=610 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 69 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 126 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 127 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCACGCTA 186 Query 121 GAA 123 ||| Sbjct 187 GAA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818917962496