Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq23213 639 0.0 seq10657 493 4e-137 seq9910 493 4e-137 seq28107 423 6e-116 seq29390 392 1e-106 seq6457 161 3e-37 seq31052 89.7 2e-15 >seq23213 Length=553 Score = 639 bits (708), Expect = 0.0 Identities = 403/434 (93%), Gaps = 1/434 (0%) Strand=Plus/Minus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 553 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTTTCTCAGGCTC 494 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 | ||||||| |||| |||||| | ||||||||||||| |||||| | ||||| || | Sbjct 493 CTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTTGGCCAATACC 434 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 | | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 433 CAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCGCAAGGCCATG 374 Query 251 CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTA 310 ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 373 CGATTCGCGAAGTTATCATGAATCACCAAGGAGCCCCGAAGGGCATTGGTTTTTAATCTA 314 Query 311 ATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACG 370 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 313 ATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAGAATTACCACG 254 Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 253 GTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGAGCCATTCGCA 194 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 GTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 135 Query 491 ATGACTACTGGCAG 504 |||||||||||||| Sbjct 134 ATGACTACTGGCAG 121 >seq10657 Length=1350 Score = 493 bits (546), Expect = 4e-137 Identities = 394/467 (84%), Gaps = 13/467 (3%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | | |||||||||||||| ||||||||||||||||| Sbjct 479 TATTTCTTGTCACTACCTCCCTGAATTAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 538 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTAGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 598 Query 163 CCCGTTGAT-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||| |||| ||||||||| ||| || ||||||||||||| |||||||||||||| || Sbjct 599 CCCG-TGATCGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTT 657 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||| || |||||| || ||| ||| | |||| ||||||||||||||| || Sbjct 658 GAACGA---TTCGCCGCAGCACAGCC--GCGGTCCGTTCAGTTATTATGAATCATCACAA 712 Query 282 AGCCC--CGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGG 337 | ||| | ||| |||||||| ||||||||||||||| ||||||| ||||| || Sbjct 713 AACCCATTGCTGGGTATTGGTTTTATATCTAATAAATACAACCCTTCCAAAAAGTCAGGT 772 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 || |||||||||||||||||||||||| |||||||||||||||| | | ||| | Sbjct 773 TTGACAGCATGTATTAGCTCTAGAATTACTACGGTTATCCATGTAGGAGAAAATAATCGA 832 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 |||||| ||||||| ||||||||||||||||||||||| |||||| | | ||||||||| Sbjct 833 ATAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCGCTGTAT--AATACTTATACTT 890 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 891 AGACATGCATGGCTTAGTCTTTAAGACAAGCATATGACTACTGGCAG 937 >seq9910 Length=1451 Score = 493 bits (546), Expect = 4e-137 Identities = 425/516 (82%), Gaps = 20/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 24 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 82 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 83 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 142 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 143 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 202 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 203 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATCGC--GC 260 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 261 AAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 316 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| ||| |||||| Sbjct 317 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTTATGCATGT 375 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | || || ||||| Sbjct 376 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 435 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 436 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 495 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 496 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 531 >seq28107 Length=407 Score = 423 bits (468), Expect = 6e-116 Identities = 329/386 (85%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||| |||| ||||| |||||||||||| Sbjct 384 GTACTCATTCCAATTACCAGACATATAGATGCCCGGTATTGTTATTTTTTGTCACTACCT 325 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 324 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGCTAGCCGTT 265 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||| |||||||||||||||||||||||| |||||||||||| || ||| |||| Sbjct 264 TCTCAGGCTCGCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAATGCCACGGTA 205 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | |||||| ||||| |||| || ||||||||||||||||||||||| | ||||||| || Sbjct 204 GTCCACTACACTACCGTCGAGAGCTGATAGGGCAGAAATTTGAATGATCTATCGCCGCCT 145 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG--TTG 298 || ||||||||||| ||||||||||||||| | | ||| || | | | ||| Sbjct 144 TGCGG-CATGCGATTCGAACAGTTATTATGAATCAAC-ACGAGTCCTCTTGCGAGGATTG 87 Query 299 GTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGG-GTTTTTAGCATGTATTAGC 355 ||||||||||||||||||||| |||||||| | |||||| ||||| |||||||||||| Sbjct 86 GTTTTTTATCTAATAAATACAACCCTTCCGGAAGGTCGGGTTTTTTTGGCATGTATTAGC 27 Query 356 TCTAGAATTACCACGGTTATCCATGT 381 ||||||||||| |||| ||||||||| Sbjct 26 TCTAGAATTACTACGGGTATCCATGT 1 >seq29390 Length=374 Score = 392 bits (434), Expect = 1e-106 Identities = 315/374 (84%), Gaps = 7/374 (2%) Strand=Plus/Minus Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 ||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||| Sbjct 374 TCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCTCTATCCTAC 315 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGA 253 |||||||||||||||||||||||||||||||||| ||||||| || ||| ||| ||||| Sbjct 314 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAAGCATCGCCAGCACAAGGGCTGTGCGA 255 Query 254 TTCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAAG--GGCGTTGGTTTTTTATCTA 310 | ||| |||||| |||| ||||| || ||| ||| ||| || ||||||||| Sbjct 254 TCCGTCGAGTTATCATGATTCACCGGAGAAGCGGGCAAGCCCGCGCCGGCCTTTTATCTA 195 Query 311 ATAAATACACCCCTTCCGA--AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 | |||| || ||||||| | ||||||| || ||| ||||||||||||||||||| | Sbjct 194 AAAAATGCATCCCTTCCAAAGAGTCGGGACTTGGTGCACGTATTAGCTCTAGAATTACTA 135 Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 ||||||||| |||||| ||||| |||||| |||| ||||||||||||||||||||| || Sbjct 134 CGGTTATCCGAGTAGTATGGTACCATCAAAAAAACTATAACTGATTTAATGAGCCATCCG 75 Query 429 CAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||| || | ||| | | |||||||||||||||||||||||||||||||||||| Sbjct 74 CAGTTTCACAGTCTGAATTAGTTCATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 15 Query 488 CATATGACTACTGG 501 |||||||||||||| Sbjct 14 CATATGACTACTGG 1 >seq6457 Length=2181 Score = 161 bits (178), Expect = 3e-37 Identities = 108/119 (91%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT 108 |||||||||||||| ||| | | ||||||||||||||||||||||||||| ||||| ||| Sbjct 835 TTGTCACTACCTCCTCGTATTGAGATTGGGTAATTTGCGCGCCTGCTGCCGTCCTTAGAT 776 Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 775 GTGGTAGCGATTTCTCAGGCTCCCTCTCCGGAATCGAACACTGATTCCCCG-TACCCGT 718 >seq31052 Length=331 Score = 89.7 bits (98), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 7/98 (7%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC--TTATACTTAGACATGCA 466 ||||| ||||||||||| ||||| || ||| | ||| |||| ||||| |||||| Sbjct 282 CTGATGTAATGAGCCATGCGCAGACTC-CTGCAG----TGCAGTTATTCTTAGGCATGCA 228 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| || |||| |||||||||||||||||||||| Sbjct 227 TGGCTTAGTCCTTGAAACAAGCATATGACTACTGGCAG 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509863218944