Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq1351 1564 0.0 seq105 147 1e-31 >seq1351 Length=7656 Score = 1564 bits (1734), Expect = 0.0 Identities = 972/1038 (94%), Gaps = 4/1038 (0%) Strand=Plus/Plus Query 2054 ATATACATTATGCGAAATCACGTATCCGCCGGATCTGGGCCTTTGTTGGGTCCGCGTGGC 2113 |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| Sbjct 3840 ATATACATTATGCGAAATTGCAGATCCGCCGGATCTGGGCCTTTGTTGGCTCCGCGTGGC 3899 Query 2114 AATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGA 2173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3900 AATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGA 3959 Query 2174 TCGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGG 2233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3960 TCGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGG 4019 Query 2234 TTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTTCCTGAAGA 2293 ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| Sbjct 4020 TTTTTCTTTCCTCGGTGATCGCCTGATCACACCCGAAGGCCGCGAGCTGCTTCCCGAAGA 4079 Query 2294 TCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAAGC 2353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4080 TCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAAGC 4139 Query 2354 TGCACGCTCGGTGCCGTCGATCGACAGTTC-CAAG-CGTGGTGGCAATCTTCCTGCAGTA 2411 ||||||||||| ||| ||| || | | ||| ||||| ||| | | ||||||| Sbjct 4140 TGCACGCTCGGCGCCA--GATTCCCATTGCTCAATACGTGGGAACAAACGTGCTGCAGTC 4197 Query 2412 ACGTGGGATCGTCCTGCCACTGTCGTCAATCTGCGGGACGTGGTGAGCCGGCGCAAACAG 2471 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4198 GCGTGGGATCGTCCTGCCACTGTCGTCAATCTGCTGGACGTGGTGAGCCGGCGCAAACAG 4257 Query 2472 CGGTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGCGGTAGACCTGCCGATA 2531 ||||||||||||| |||||||||||||||||||||||||||||||| || ||| || | Sbjct 4258 CGGTCGGCGGTGGTGATGGCTGGCCCTGACGCCGAGCCACCAGCGGCAGTCCTACCAGGA 4317 Query 2532 CTGGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCTGCCCCTACAC 2591 |||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 4318 TCGGGGCCGAGGCCTCGCCAGCGCGGATGAGGCGTTTCCGTAGGGGCGCTGCCCCTACAC 4377 Query 2592 CCCGGATCACTGCTCCCGACAGCGTAACCATCCGCCAGAGCGCGAGGACACCTGTTCCCA 2651 |||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| Sbjct 4378 CCCGGATCACTGCTCCCGGCAGCGCAACCAGCCGCCAGAACGCGAGGATACCTGTTCCCA 4437 Query 2652 CCCGTTTGGCAGCCTACGCATCGCCTGACCGCCAATGCACGCCATTCCTGAGCGCTTCGC 2711 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 4438 CCCGTTTGGCAGCCTACGCATCGCCTGACCGCCAATGCACGCCATTCCTGAGCGTTTGGC 4497 Query 2712 TGCATCAGTACCCATCGCAGGTAGCGTCACCACCTCGGTAGATGGACTTGGGCGTCCCGC 2771 |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 4498 TGCATCCGTACCCATCGCAGGTAGCGCCACCACCTCGGCAGATGGACTTGGGCGTCCCGC 4557 Query 2772 CTGCCTGGACTCCTGCTGTAGTGCATTGGCCTCAAGCCCATCACAGAGCGGTTTCATGCC 2831 |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| Sbjct 4558 CTGCCTGGACTCCTGCTGTAACGCATTGGCCTCAATCCCATCACAGAGCAGTTTCATGCC 4617 Query 2832 CGGATGAGGATGGTTCGGCCAGCGGTACTGTTCACAATTGAATGGCGTTGTCGTCTTCGC 2891 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 4618 CGGATGAGGATGGTTCGGCCAGCGGTACTGTTCACAGTTGAATGGTGTTGTCGTCTTCGC 4677 Query 2892 CATCGAGTTATACGCGGCCTTGGGCGCTGCCGGAATTGGCTTTGGCGCTGGCCCCCTCGC 2951 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 4678 CATCGAGTTATACGCGGCCTTGGGCGCTGCCGGAATCGGCTTTGGCGCTGGCCCCCTCGC 4737 Query 2952 TGAATGAATCTGCTGTGCTGACGCCACGCTGGTTATGACCAGCAATGCACACATCGCCCC 3011 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 4738 TGAATGAATCTGCTGTGCTGACGCCACGCTGGTCATGACCAGCAATGCACACATCGCCGC 4797 Query 3012 AAGTCGAATGTCCATATTCCCCTCCAGATTGGAGGGATGGTACTCGATACCGTTAATTTG 3071 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 4798 AAGTCGAATGTCCATATTCCCCTCCAGATTGGAGGGATGGTACTCGATGCCGTCAATTTA 4857 Query 3072 CGTGACGCATCACGCCTC 3089 |||||||||||||||||| Sbjct 4858 CGTGACGCATCACGCCTC 4875 Score = 224 bits (248), Expect = 4e-55 Identities = 206/258 (80%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 2337 CGCCGGATGATGGAAGCTGCACGCTCGGTGCCGTCGATCGACAGTTCCAAGCGTGGTG-G 2395 ||||| |||||||| ||||||||||||||| ||||||| | ||||||| | | ||| | Sbjct 4875 CGCCGTATGATGGAGGCTGCACGCTCGGTGTGGTCGATCAATAGTTCCA-GAGACGTGCG 4933 Query 2396 CAATCTTCCTGCAGTAACGTGGGATCGTCCTGCCACTGTCGTCAATCTGCGGGACGTGGT 2455 ||||| ||| || ||| ||| ||||||||||||||||||||||| ||| | Sbjct 4934 CAATCAAGATGCCAGAATCCATCATCATCCCGCCACTGTCGTCAATCTGCGGGATGTGAT 4993 Query 2456 GAGCCGGCGCAAACAGCGGTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGC 2515 || ||||||||| ||||| |||||||||||| ||||||| |||||||| || || Sbjct 4994 GACCCGGCGCAAGCAGCGTTCGGCGGTGGCGTTGGCTGGAATTGACGCCGTTCCGGTGGC 5053 Query 2516 GGTAGACCTGCCGATACTGGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGG 2575 || || ||| || ||| |||||| || |||||||||||||||||||||||||||| ||| Sbjct 5054 GGCAGCCCTACCCTTACCGGGGCCGATACCTCGCCAGCGCGTGTGAGGCGCTTCCGCAGG 5113 Query 2576 GGCGCTGCCCCTACACCC 2593 ||||||||||| || ||| Sbjct 5114 GGCGCTGCCCCCACGCCC 5131 >seq105 Length=31684 Score = 147 bits (162), Expect = 1e-31 Identities = 212/297 (71%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 2054 ATATACATTATGCGAAATCACGTATCCGCCG-GATCTGGGCCTTTGTTGGGTCCGCGTGG 2112 |||||||||||||||||| ||||| | || |||| || || || || || ||| Sbjct 12149 ATATACATTATGCGAAATGCTGTATCGGGCGTGATCCGG---TTCGTCGGCTCGATCTGG 12093 Query 2113 CAATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAG 2172 ||||||||| | |||||||| ||||||||||| | | | ||||| | |||||||||| Sbjct 12092 CAATGGCTGCGGCTCTGGCTTGGCTCTTGCCTCCCTGTTGGCTCCCCCGACAAGGATGAG 12033 Query 2173 ATCGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCG 2232 ||||| |||||| || | || || || | || || ||| | |||||||||||||||| Sbjct 12032 ATCGCAGCATGAGCAAGATGGATCCCCATGATCGCATTGACCTAACCGGCCCTTGGGCCG 11973 Query 2233 GTTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTTCCTGAAG 2292 |||| |||| |||| | || |||| |||||||||| |||| || | Sbjct 11972 GTTTCGGATTCCAAGGTGGACACATGTTCACCCCCGAAGGCCATCAGCTTGAGCCATGCG 11913 Query 2293 ATCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGG 2349 | |||||||| ||| || ||| | | |||| |||||||| | |||||||| Sbjct 11912 ACATGGCCTGGTGGTCCCTGACCTGCAACATTGCGCGCGAATGGCGGCTGATGATGG 11856 Score = 86.0 bits (94), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 2064 TGCGAAATCACGTATCCGCCGGATCTGGGCCTTTGTTGGGTCCGCGTGGCAATGGCTGGG 2123 ||||||||| ||| |||||||||| |||||||||||| || ||||||||||||||||| Sbjct 709 TGCGAAATCGTATATTCGCCGGATCTTGGCCTTTGTTGGCTCTGCGTGGCAATGGCTGGG 650 Query 2124 CCTCTGGCTCGG 2135 | | |||||||| Sbjct 649 CGT-TGGCTCGG 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21978409215116