Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq451 309 2e-79 seq195 205 7e-48 seq1997 120 2e-22 >seq451 Length=16219 Score = 309 bits (342), Expect = 2e-79 Identities = 1150/1773 (65%), Gaps = 71/1773 (4%) Strand=Plus/Plus Query 65122 ATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTT 65181 |||||||||||| ||||||||||| ||| |||||||||||||| |||| | | || Sbjct 7633 ATAGTACATGCCCGTCTTGAGGCCCTTTTTCCATGCATAGAAATGCATAGATG-TGAGTT 7691 Query 65182 TGCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 | | | || |||| ||||| | || ||||| | ||| |||||||| |||||| Sbjct 7692 TAC-TGATCGTCGGATCGGCAATGTGAATATTGAGCGATTGACTCTGGCAAATGTAAGCG 7750 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTA 65298 |||||||| || | |||||| | || |||| | | || ||||| ||||||||||| Sbjct 7751 CCACGATCAGCCGACATGTCCAAGAC-CGACTTTTGCTTGATTTCCCACACGGTCTTGTA 7809 Query 65299 CAGGCGACGTACCTCAAT------TGGAATCTCCTCAATGTCCTGGACTGAACCAC-GAC 65351 | | ||| || |||||| || | | || || || |||| | | Sbjct 7810 CTT------TTCCTTGATATGGTCTGGAATGGTCTTGACCTTTTGCACCGATCCACCGTC 7863 Query 65352 GTGCAATAATGCGATTACGCA-TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGA 65410 || ||| | | ||||||| | | | | | ||| | |||||||| || || | | Sbjct 7864 GTTCAAGATTT-GATTACGGACTTCAGGC-GTCCAGATGCCCAAATCAATCAGCTCCTTC 7921 Query 65411 ACCAAGTGACGATTGATGACT-TGG--AACTCGCCGGACAGTACACGACGGACATAGATG 65467 | || || | ||| |||| | | ||||| || | ||||| ||||| || ||| Sbjct 7922 ATCA---GATGCTTGTTGACGATCGTAAACTCACCAGCGAGTACGCGACGATTGTACATG 7978 Query 65468 TTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTT 65527 || || ||| || || | ||||||| ||||||| || || |||||||| || |||||| Sbjct 7979 TTTGATGTGTACGGCTCGATGGATTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCAGTT 8038 Query 65528 GGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAAT 65587 ||||| ||||| || | ||| ||||| || | |||| | | | || | ||| Sbjct 8039 GGCATAGGAGCCACTAGCAAAGAGTTACGAATACCGTGCTTGATCACATTCTCCTTCAAG 8098 Query 65588 TCGTCCCAGTTCCACATCGGTTTATCGTCGAC--ATCCACGGGCCACATATCCTGTTGCA 65645 || ||||| ||| | | | | |||| | || |||||| || ||| | Sbjct 8099 GCGGTCCAGTCCCAAA---GACCA--GACGACGGAGTGACACCCCACATGTCAAATTGGA 8153 Query 65646 GGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAA 65705 | | || | ||||| || || || |||| | |||||| ||| |||||||||| Sbjct 8154 AGATCCCCTTGCTGGCAGGGGAGCCCTGGAACGTCTCGTACGGACCCAGTTCCTTGGCAA 8213 Query 65706 GTTG-ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGT 65764 | | || | |||| | | || | || |||||||| || ||| || ||| Sbjct 8214 TCTCCATAGAAG-TCTCCATCGAAGCGTAGTAGATGGTCTCAAAGATGTTCTTGTTCAGT 8272 Query 65765 TCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCT 65824 ||||| ||||| || || || ||| | ||| || | ||||| |||||||||||| Sbjct 8273 TCACGAGCCTCTTCACTTTCAAACGCAAAGTTCATGAGAAGAAAAGCATCGGCCAGACCT 8332 Query 65825 TGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGG 65884 ||||| ||||| || | ||||||||| |||| ||||| || || || | || ||| Sbjct 8333 TGAACACCAATTCCCACGGGACGATGGCGCATGTTGGATTTTCGAGCTTCTGCAACCGGG 8392 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGC 65944 ||||| |||| || || | || | ||||| || || || | | |||||| Sbjct 8393 TAGTAGTTGACGTCAATGACTTTGTTGAGGTTGCGGGTGACGACCTTG--GTCACGTCGT 8450 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | | ||| | ||| | || ||| ||||||||||||| Sbjct 8451 ACA-----GCAATTTGTA-GTTGAACACA----------CCGTCTTCCACAAACTTGGGC 8494 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | || || | |||||| || || | |||||| |||| || ||||| | | Sbjct 8495 AGCGCCACTGACGCCAAGTTGCACACCGCAACCTCGTCCGGAGACGTGTACTCCATCACC 8554 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| |||||| | || || ||||| | |||||| ||||| ||| |||||| Sbjct 8555 TCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGATTGGACTTACGATTG 8614 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || |||||||| | ||| | || || ||||||| || | || | |||||| Sbjct 8615 GCCGCGTCCTTGTAAAGCATAAAGGGCACCCCCGTCTCAATCTGTGCGTCCAAGATGGCA 8674 Query 66185 TGCCAAAGAGCGC-GTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAAT 66239 ||| | | || | || || | ||| || | || || |||| | | ||| Sbjct 8675 AACCACA-ACTGCTGCGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCATACGT--- 8730 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 |||||||||| || || || ||||| ||| | |||| ||| | || || Sbjct 8731 -TTCGTAGAGGGTCTCAAATTCATCTCCCCAGCACTCGTAGAGACCAGGAGCTTCGTTTG 8789 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 |||| | || ||| | |||| ||| || || ||| || ||||||| ||||| Sbjct 8790 GACAAAACAAACTCCACTTGCCATTACTTTCCACTCGTTTCATGAACAGATCAGATATCC 8849 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | || ||||| || | || || ||||| ||| ||| ||||||||||||| || | | Sbjct 8850 ATAGAGCGTAAAACAAGTCACGCGCTCGGTGCAGTTCACTGCCGTGATTTTTTCGGAGAT 8909 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 ||||||||||||| | ||| |||||||||||||||| |||||| || || || || | | Sbjct 8910 CGAGGAACTCAAACACGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCTTTGC 8969 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 |||| || ||||||||||| || || ||||| | ||| || || |||||||| || | Sbjct 8970 GTTTACCTCCACCTTGGTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATGGGGA 9029 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCG 66598 || ||||| || || || || || ||| | | | |||| || || |||| | Sbjct 9030 TGATACCGTTGGAAGACCCGTTAGTACCACGGAT-GTAGCTGTTCGTAGCTCGGATATTG 9088 Query 66599 TGAACATTCAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 || ||| | || |||||||| || ||| ||| ||||| |||||| | || || Sbjct 9089 TG--CATGCTGATCCCAATACCTCCCGCCCACTTTGAGATACAAGCACATTGCTTCAATG 9146 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | || || ||||| || ||| | | |||| || | | || ||| | || Sbjct 9147 TATCATAGATTCCTTCAATTGAATCATCTTGCATGGCAAGTAAAAAACACGAAGATAATT 9206 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | || || ||| | || || | ||||| || || || |||||| | | ||| Sbjct 9207 GCGGCCGTGGAGTGCCAGCATTAAACAACGTGGGCGTCGCATGGGTAAAGAACTTTTGAG 9266 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 |||| | | ||||||||| | | || | |||||| ||||||||| || ||| Sbjct 9267 ACATCAATTCGTACGTCTCTAAAGCTGCTTGAATGTTGCTCTTATGAATCCCAAGAGCAA 9326 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCA 66869 ||||| | | | || || ||||| |||| Sbjct 9327 CGCGCATAATCATTTGCTGGGGTCGTTCAACCA 9359 >seq195 Length=24554 Score = 205 bits (226), Expect = 7e-48 Identities = 584/886 (66%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 ||||| ||| | ||||| || || | | ||| | |||| |||||||| || || || Sbjct 22705 CGTTTTGTACTCTTCCCGATTCAGGAGAATGATGTCTGGCAGATGTACAAGAAAGCTGAG 22764 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || || ||||||| |||||| | ||| || | ||||| || || ||| | Sbjct 22765 GCCTCGTTTTGGACGGCTGAGGAGCTGGATCTGGTGCACGACATTAAAGATTGGAAAAAC 22824 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | | | || | || || || || |||||| | || |||||||| || || Sbjct 22825 CTCACTGACAACGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGAT 22884 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || || || ||||| || | || |||| ||| | || ||||| || | || Sbjct 22885 GGCATTGTGAATGAAAACCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTTCCCGA 22940 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 || || ||||||||||| || |||||||| || ||||| | ||||||||| | || Sbjct 22941 AGCTCGGTGTTTCTACGGTTTTCAGATTGCTATCGAGAACATTCACTCGGAGGTCTATTC 23000 Query 61350 TGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCA 61408 | ||||| || |||||||||| ||| || | | | | || | ||| | ||||| Sbjct 23001 GCTACTCATTGACACGTACATCAAGGACGCTGTAGAGAAG-GACCTTTTGCTGCGTGCCA 23059 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA-TCACCAGT 61467 | || || || ||| |||||| |||||| | |||||| |||| ||| | ||| | Sbjct 23060 TTGACACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGGGCACTCAAGTGGTGTGACCCGC 23119 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | ||| | || || | || || || || || |||||| | || ||| Sbjct 23120 GTGT-GTCGTCATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGGTATCTTCTTC 23178 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 ||| || || | | ||||| ||| ||||||||||||| || ||||| ||||| | | Sbjct 23179 TCTGGCTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGTGGTCTCATGCCTGGTCTCAGC 23238 Query 61588 TTCAGCAATGAGTTGATATCA--CGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT-- 61642 || |||||| | ||||| || || ||||| |||||| || ||||| || | Sbjct 23239 TTTTCGAATGAGCT--TATCAGTCGTGATGAGGGTATGCATACCGACTTTGCCTGCCTCA 23296 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 || | ||||| |||| ||| | | ||||| |||||| ||||| ||| Sbjct 23297 TGTACTCCAAAC------TGGTCAATAAGCTGCCGGAGAGTCGTGTGCACGAGATCATTC 23350 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 |||| ||||| ||||||| || || ||| || |||| | | || || ||||||| Sbjct 23351 GTGACGCGGTGGCTATCGAGCACGAGTTTGTGTGTGACTCCCTCCCTGTTGAGCTCATCG 23410 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 ||||||| | || |||| ||||| || || || || || ||||||||| || | Sbjct 23411 GCATGAACTCAACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACT 23470 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || ||| || | || ||||| || || | ||||||||||| | Sbjct 23471 CATTGGGGGTGTCTAAGATTTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCT 23530 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | || | |||||||| || || || ||||| |||||||| || || Sbjct 23531 CACTTCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTAGGTGAATA 23576 >seq1997 Length=5797 Score = 120 bits (132), Expect = 2e-22 Identities = 297/451 (66%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 61190 AACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGA 61249 || |||| || |||||| | || || || ||||| || || |||||||| || ||||| | Sbjct 2563 AATATTTTATCAAACATATTTTAGCTTTTTTTGCTGCATCAGACGGTATTGTGAATGAAA 2504 Query 61250 ATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCT 61309 | | || ||| | | || || ||| |||| || | ||||||||| | Sbjct 2503 ACCTGGCAGAGAATTTTGTAAACGAAGTTCAATATCCGGAAGCTAAATTTTTCTACGGAT 2444 Query 61310 TCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACA 61369 |||| || ||||||||| ||||| || | || | |||| || |||||||| Sbjct 2443 TCCAAATCATGATGGAGAATATCCACAGCGAAACCTATTCTCTTCTGATTGATACGTATG 2384 Query 61370 TCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGA 61429 | | || || ||| || | | ||| | || | || | ||||| | | Sbjct 2383 TAAAAGATGAAGCAGAAAAGGACCAGCTTTTCCACGCTTTGGAAGTATTTCCGGCAATTA 2324 Query 61430 AGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAAC 61489 || |||||||| ||||| || || ||||| | | | | | |||||| |||| Sbjct 2323 AGAAAAAAGCGGACTGGGCTTTAAAATGGAT------TGAATCCGATTCATTTGCTGAAA 2270 Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 || || | || ||||| | || || || | |||||| ||| | || | |||| Sbjct 2269 GACTGATTGCTTTTGCAGCCGTAGAAGGAATCTTTTTCTCAGGAGCATTCTGTTCTATCT 2210 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 ||||||||| ||||||||| | ||||| ||||| || || ||||| ||||| |||| Sbjct 2209 ATTGGTTGAAAAAACGTGGATTGATGCCGGGTCTTACTTTTTCAAATGAATTGATTTCAC 2150 Query 61610 GCGACGAGGGCATGCATTGTGATTTTGCTGT 61640 | || || ||| | |||||||||||||| || Sbjct 2149 GTGATGAAGGCGTACATTGTGATTTTGCAGT 2119 Score = 105 bits (116), Expect = 5e-18 Identities = 370/578 (64%), Gaps = 0/578 (0%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||||||| | || | | | ||| || ||||| || || || || || || || | Sbjct 199 CCACAAACATTGGCAATGAGATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAG 258 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||| | ||||| || ||||| ||| |||| || || |||| || | || | Sbjct 259 TGTACTCCATGATTTCTGTACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGT 318 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | || || || ||||| || |||| |||||| || || ||||| |||| ||| | Sbjct 319 TTGATTTACGGTTTGCCGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAG 378 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 | || | || | |||||| | | |||||| | || | | || || | Sbjct 379 ATTCCAGAATTTTTTCCCAAAGTTCTCTTGCCTTAATGGTTTTTCTTCCTCTGCCCTGTT 438 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 ||| ||| || || ||| || |||||| | | || | || | || | Sbjct 439 CTTCATAAGAAGTATAAAGCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCGGGC 498 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 | | || ||||||||||| || ||| | ||| | | ||||| ||| || | | Sbjct 499 ATTCGTTTGGACACATCAACGTCCATGTAGAATCTTCCTGAACACGTTTCATGAACAAGT 558 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 | | |||| | ||| |||| | ||| || || || || || | || || |||| Sbjct 559 CCGAAGTCCACATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTTTTCCATGGTTTT 618 Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 | || ||| ||||| ||||| || || || ||||||| ||| | ||||| || || Sbjct 619 TCTTCAGGTCAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAAC 678 Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530 || | ||||| || || || ||||| || || |||||| || ||||| ||||||| Sbjct 679 TTCCTTTGCGTTTTCCTCCTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCA 738 Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||||||| || | ||||| || | || || || ||| Sbjct 739 ACATCGGAACAATTCCGTTTGACGTTCCGTTTGTTCCG 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397395800750960