Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq32843 116 1e-21 >seq32843 Length=286 Score = 116 bits (128), Expect = 1e-21 Identities = 109/134 (81%), Gaps = 5/134 (4%) Strand=Plus/Minus Query 53146 TTCAAAGAAAGTTAAAC-GCAGGCAATGTATGTTACGCGTTTTAAAGGGATGTGTGGTTT 53204 ||||||||||||| | | ||| || ||||||||||||||||| | | ||||| ||||| Sbjct 130 TTCAAAGAAAGTTTACCTGCAT-CAGTGTATGTTACGCGTTTTTA--GAATGTGCGGTTT 74 Query 53205 GCGGGTATGTACGATTTTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGtttttttA 53264 | ||||||||| |||||||||||| || || |||||||||||||||| || ||| | Sbjct 73 TTTG-TATGTACGAGTTTAATCTGGTGCTGTTGTTGCTTCAGCAGATGTGTGTGTTTCTT 15 Query 53265 GTCATTGCGTGGTT 53278 ||||| || ||||| Sbjct 14 GTCATCGCCTGGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175471515258444