Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2536 264 4e-66 seq1527 244 3e-60 seq25322 132 2e-26 seq1864 132 2e-26 >seq2536 Length=4875 Score = 264 bits (292), Expect = 4e-66 Identities = 821/1253 (66%), Gaps = 37/1253 (3%) Strand=Plus/Minus Query 1674 AATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGA 1733 |||||||| | || ||||| | || ||||||| || | || || ||||| |||| Sbjct 3644 AATTATTA---AAATCCACGCAAGGCAAATCCTTGATTCCAGAGGAAATCCAACTATTGA 3588 Query 1734 AGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATC 1793 ||| || || || ||| ||| || ||| | | | || || |||||||| || Sbjct 3587 AGTTGATGTAGTAACAGAACATGGAATTTTGGGTAGGGCTGCCGTACCGTCAGGAGCTTC 3528 Query 1794 AACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCT 1853 ||| || ||||| || || ||||| ||||||||||| | ||||| ||| || || Sbjct 3527 AACCGGAGAACATGAGGCCGTAGAGCTTCGTGATGGAGGTAAAGCAT-TTATGG--GTAA 3471 Query 1854 TGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGG--A 1911 || | ||||| || || || ||||| | ||||| || | | | || | Sbjct 3470 AGGAGTTATGAAAGCGGTGGAAAATGTAAATATTAAAATTGCCGAAGAATTATTAGGGAA 3411 Query 1912 TTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCA 1971 ||| | || | ||| | || || | |||||| | | || || ||||| Sbjct 3410 TTCTGTTTTCGAGCAAAACCTG--ATCGATCAGAGAATGATTGAATTGGATGGCACTCCT 3353 Query 1972 AACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCA 2031 || || || || ||||| || ||||||||||| || ||| | || || || || Sbjct 3352 AATAAGTCAAACCTGGGTGCTAATGCTATTCTTGGGGTTTCTTTGGCGGTTGCCAAAGCG 3293 Query 2032 GCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGA--TTCAACACTAAAG 2089 ||||| | | | | | || | || | || |||| || |||| ||| Sbjct 3292 GCTGCAAATGAATTGGGCTTGCCGTTGTATCGTTATGTTGGAGGTGTTTCAGG--TAATA 3235 Query 2090 TTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCG 2149 ||||| ||| |||||||| ||||||||||| ||||| ||||| || |||||||||| Sbjct 3234 CGCTTCCGGTTCCTATGATGAATATCATCAACGGAGGTTCGCACTCGGATGCTCCAATCG 3175 Query 2150 CTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTT 2209 |||| || |||||||||||| | || | ||| ||| || | | |||| | | Sbjct 3174 CTTTTCAGGAATTTATGATTATGCCGGTAAAAGCAAAAACGTTTACACAAGCAATGCAAA 3115 Query 2210 GGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACA 2268 ||| | || | || ||| || || ||| | | | || | ||| |||| || Sbjct 3114 TGGGGACAGAGGTTTTTCACCATCTGAAAAAAGTATTGCACGATAGAGGA-TTGAGTACT 3056 Query 2269 GCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGG---AACTGAAGATGGTGTT 2325 || ||||| || ||||||||||| || || ||| | || ||| ||||| | | Sbjct 3055 GCGGTAGGCGATGAAGGTGGTTTTGCTCCAAATTTGGCTGGTGGAACAGAAGACGCATTG 2996 Query 2326 GAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATC 2385 || | || | || || | ||| || || ||||| ||| |||| |||| | Sbjct 2995 GATTCAATTAAAAAGGCGGTTGAAAACGCAGGTTATGTTTTTGGTGAAGA--TATTAAGA 2938 Query 2386 GGACTT--GACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACA 2443 ||| |||||||| | || ||||| || || | |||| ||| |||||| |||| Sbjct 2937 TTGCTTTAGACTGTGCTGCCTCAGAATTTTA---TGTA-AACGGAAA--TTACGATTACA 2884 Query 2444 CTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTG 2503 || |||||||||||| | || ||| || | |||||| || || | | Sbjct 2883 AGAAGTTTGAAGGTGAAACAGGGAAAGTCCGTTCTTCAAAAGAACAGGCGGAATATTTGG 2824 Query 2504 AAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACT 2563 ||| ||| ||||| ||||| || | || ||||| |||||| | ||||| || | Sbjct 2823 CTGAACTGGCATCAAAATATCCAATTATTTCGATTGAAGACGGTATGCAGGAAAATGATT 2764 Query 2564 GGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACG 2623 ||||||||||||||| |||||| ||| | || | |||||| || | || || || | Sbjct 2763 GGGACGGTTGGAAATATCTTACAGAATTAATAGGGGATAAAGTACAGCTTGTAGGAGATG 2704 Query 2624 ACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTG-CA---GAACACGCTGCT 2679 | || || ||||| || || ||| ||||||| || | || ||| ||| Sbjct 2703 ATTTGTTTGTAACCAATGTTGAGCGTCTTAAAAAAGGAATCGACAAGGGAA----TTGCA 2648 Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739 || ||||| | | ||||| ||||| || ||||| || |||||||| ||| || | Sbjct 2647 AATTCAATTTTAGTAAAAGTAAACCAGATTGGTACGTTAACTGAAACCATTGCTGCAGTA 2588 Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799 | ||||| | | || ||||||||| ||||| | || |||||||| || ||||| ||| Sbjct 2587 AATATGGCACACAATGCCGGATACACATCAGTAATGTCGCACCGTTCCGGAGAAACAGAA 2528 Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCA 2859 || || || || ||| | || || || ||| ||| ||||| || ||||||||| Sbjct 2527 GACAATACGATTGCAGATTTGGCGGTAGCTTTGAACTGTGGACAAATAAAAACAGGTTCA 2468 Query 2860 TTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 || ||| |||||||||| || |||||||||||||| |||||||| || || Sbjct 2467 GCATCGCGTTCTGACCGTATGGCAAAATACAACCAATTACTTCGTATTGAGGA 2415 >seq1527 Length=6971 Score = 244 bits (270), Expect = 3e-60 Identities = 787/1197 (66%), Gaps = 72/1197 (6%) Strand=Plus/Plus Query 1693 GCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT--TTACACTG 1750 ||||||||| | | ||||| || ||||||||||| | |||| ||| || || | | Sbjct 5814 GCACGTGAAATTTTGGACTCTCGTGGTAACCCAACCATCGAAGCAGACGTAATTTTA--G 5871 Query 1751 AATCTGGTGCATTCGGTCGCGGTATG-GTTCCTTCAGGAGCATCAACTGGTGAACACGAA 1809 ||||||| | | ||||| | ||| | || || || || ||||||||| | ||| Sbjct 5872 AATCTGGGGTTGTTGGTCGTGC-ATGTGCACCATCTGGTGCTTCAACTGGTTCTCGTGAA 5930 Query 1810 GCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCA 1869 || ||||||| ||||| ||||| ||| | |||||| ||| ||| | ||| || Sbjct 5931 GCTCTAGAACTACGTGACGGTGATAAATCGCGTTACTTAGGTAAAGGTGTTAAAACTGCG 5990 Query 1870 GTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGG---ATTCGACGTACGTGAT 1926 ||| | |||||||||| |||| ||| | | | | || | || ||| ||| Sbjct 5991 GTTAACAACGTAAACACGATTATCCGTGA-CGCTTTAGTGGGCAAATCA--GTATTTGAA 6047 Query 1927 CAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTT 1986 ||| ||| || || | ||||||| ||||| |||||| |||||||| ||| | Sbjct 6048 CAAAAAGACATCGATAATACGATGATCGAACTTGATGGTACTGAAAACAAAGAAAAATTG 6107 Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTT 2046 ||||| || || | | | | |||||| | |||| |||||||| |||||||| | Sbjct 6108 GGTGCAAATGCAACTTTGGCTGTGTCATTGGCTGCTGCACGCGCTGCTGCTGATGAAAAG 6167 Query 2047 GAAGTTCCACTTT------ACA--GCTACCTTGGCGGATTCAACACTAAAGT-TCTTCCA 2097 || |||| |||| ||| ||| ||| | | |||| | | | | || Sbjct 6168 AAAATTCCTCTTTTCCAATACATCGCTGACTTACGTGGTCAAACAATTTTGACTATGCCT 6227 Query 2098 ACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAA--TCGCTTTCC 2155 |||||||||||||||||||| |||||||| || ||||| ||| | | | | | Sbjct 6228 GTACCAATGATGAACATCATCAATGGTGGTTCACATGCAGACAA--CAACGTTGATATTC 6285 Query 2156 AAGAATTTATGATTGTACCTGCTGG-TGCACCAACATTCAAAGAAGCGCTTCGTTGGGGT 2214 |||| |||||||||| || | || | ||| |||| ||||| | ||| ||| Sbjct 6286 AAGAGTTTATGATTGAGCCAGTAGGCTTCACTT-CATTTGCTGAAGCATTACGTGCTGGT 6344 Query 2215 GCTGAAATCTTCCACGCGCTTAAGAAAATCC---TTAAAGAACGTGGACTTGAA-ACAGC 2270 |||||||||||||| | || |||||| ||||| || | || || || || Sbjct 6345 GCTGAAATCTTCCATTCTCT----AAAATCAGTTTTAAACAAAAAAGGTTTAAACACTGC 6400 Query 2271 CGTAGGTGACGAAGGTGGTTTCGCACCTCGTTT-CGACGGAACTGAAGATGGTGTTGAAA 2329 || ||||| ||||||||||| ||||| ||| || ||| ||||| | | Sbjct 6401 TGTGGGTGATGAAGGTGGTTTTGCACCAAATTTGCGTTCAAAC-GAAGAAGCAATCACTG 6459 Query 2330 CTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGAC 2389 ||| | ||||||| | |||| || | | ||| ||| | | | | | Sbjct 6460 TTATTCTTGAAGCTATTGGTCAAACTGGTTACAAAGCTGGTTCTGACATTATGTTGGCGC 6519 Query 2390 TTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAAT 2449 ||||||||||||| || ||||||||| | | | || || |||| Sbjct 6520 TTGACTGTGCATCTTCAGAATTCTACAA---AAATGGTCAA---------TACATCC--- 6564 Query 2450 TTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATC---GACTACCTTGAAG 2506 ||| |||||||||| | | ||| ||| | || || ||||| | | | Sbjct 6565 TTGCAGGTGAAGGCAATAAAGCATTTACAA--GCA-ACCAGTTCTCTGACTATTTAGCGG 6621 Query 2507 AATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGG 2566 | || ||| |||| ||||| ||| | || ||||||||| | || ||| || |||| Sbjct 6622 GTCTTGTAAACCAATATCCAATTATCTCAATTGAAGATGGTTTAGATGAATCAGATTGGG 6681 Query 2567 ACGGTTGGAAATCTCTTACTGAACGTCT-----TGGTGGTAAAGTTCAATTGGTTGGTGA 2621 | |||||| ||||||| || ||| ||||| |||| | |||||||||||||| Sbjct 6682 AAGGTTGG-----TCTTACTTGACATCTATCCTTGGTGATAAAATCCAATTGGTTGGTGA 6736 Query 2622 CGACTTCTTCGTAACTAACACT--GCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCT 2679 ||| | ||||| || ||| || | || | || |||||| || | | | | Sbjct 6737 TGACCTGTTCGTTACAAACCCTAAGATTT--TACAACGTGGTATTAATGAGAAAGTAGGT 6794 Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739 ||||| ||| | |||||| |||||||| ||||| |||||||||||| | || || || Sbjct 6795 AACTCTATCTTAATCAAATACAACCAAATTGGTACGTTGACTGAAACTCTAGATGCAATT 6854 Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799 | | || |||||| ||| ||||| | ||| | || |||||||| |||||||||||| Sbjct 6855 TACCTTGCTAAAGAAAATGGTTACACGACTGTAATTTCTCACCGTTCTGGTGAAACTGAA 6914 Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856 |||||||| || ||||| | ||||| | || ||||||||||||||||| ||| Sbjct 6915 GATTCAACTATTGCTGACTTAGCAGTAGGTACAGCGGCTGGTCAAATTAAGACTGGT 6971 >seq25322 Length=486 Score = 132 bits (146), Expect = 2e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739 ||||| ||||| ||||| | ||||| ||||| || |||| || || || | ||| ||| Sbjct 73 AACTCGATCCTCATCAAGATCAACCAGATCGGCACCCTGACCGAGACCTTCGCCGCCATC 132 Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799 |||||||| || || || ||||| || || | || ||||| || || ||||| ||| Sbjct 133 GAAATGGCCAAGCGCGCCGGCTACACGGCCGTGATCTCGCACCGCTCGGGCGAAACGGAA 192 Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCA 2859 || || || ||||| || || | || | || ||||| || || || ||||| || || Sbjct 193 GACTCGACCATCGCCGACATCTCGGTGGGCACCAACGCCGGCCAGATCAAGACCGGCTCG 252 Query 2860 TTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||| || | ||||| || || || |||||||| |||| || |||||||| Sbjct 253 CTGTCGCGCTCCGACCGCATCGCCAAGTACAACCAGCTGCTGCGCATCGAAGA 305 >seq1864 Length=6060 Score = 132 bits (146), Expect = 2e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2677 GCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCT 2736 || ||||| ||||| ||||| | ||||| ||||| || |||| ||||| || | ||| Sbjct 46 GCCAACTCCATCCTGATCAAGATCAACCAGATCGGCACGCTGACCGAAACCTTCGCCGCC 105 Query 2737 ATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACT 2796 ||||||||||| || || || ||||| || || | || ||||| || |||||||| Sbjct 106 ATCGAAATGGCCAAGCGCGCAGGCTACACGGCCGTGATCTCGCACCGCTCCGGTGAAACC 165 Query 2797 GAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856 || ||||| || || || || || | || | || ||||| || || || ||||| || Sbjct 166 GAGGATTCGACGATTGCCGACATCTCCGTGGGCACCAACGCAGGCCAGATCAAGACCGGC 225 Query 2857 TCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAA 2916 || || ||| | ||||| || || || |||||||| |||| || ||||| || | Sbjct 226 TCGCTGAGCCGTTCGGACCGCATCGCCAAGTACAACCAGCTGCTGCGCATCGAGGAAGAC 285 Query 2917 CTTGGTGA 2924 || ||||| Sbjct 286 CTGGGTGA 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155972547796716