Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq6884 178 2e-39 seq10726 172 8e-38 seq23650 161 2e-34 seq10022 150 3e-31 seq29161 143 4e-29 seq10355 114 2e-20 seq776 114 2e-20 seq32881 93.3 7e-14 seq11529 93.3 7e-14 seq4223 87.8 3e-12 >seq6884 Length=2068 Score = 178 bits (196), Expect = 2e-39 Identities = 185/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| ||||| | | | | ||||| |||||||||||||| || | Sbjct 1179 GACCGCACCGGCACCGGCACGCGCAGCGTGT-TCGGCTGGCAGATGCGCTTCGACCTCAA 1237 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||||||||||||||| |||||||| || ||||| || ||||| || || || Sbjct 1238 CGAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCT 1297 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| || || || ||||||||| ||||| || |||||| ||| || Sbjct 1298 GCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCAT 1357 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||||||||| ||| || | ||||||||||| ||||| ||||||||||| Sbjct 1358 CTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCG 1417 Score = 102 bits (112), Expect = 1e-16 Identities = 216/317 (68%), Gaps = 18/317 (6%) Strand=Plus/Plus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || ||||| |||||||| || | || || |||||||| || |||||||||||||| Sbjct 1602 TGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGC 1661 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899 ||||| |||||| |||||||||||||| || ||| | || ||| ||| || Sbjct 1662 TACGCGCTGCTGACGCACATGGTGGCGCAGGCGACGGGT---CTCGGCGTCGG-CGATTT 1717 Query 196900 CGTTTGGACTGGC--GGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAA 196957 ||| | || || || |||| ||| | || || || ||| || |||| ||| Sbjct 1718 CGT--GCACACGCTGGGCGACGCGCACCTGTATTCGAACCACTACGACCAGGCGCGTGAA 1775 Query 196958 CAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG- 197016 || ||| | || |||| |||||||||| |||| |||| | | | || || Sbjct 1776 CAACTGGCGCGCGAACCCCGCGCGTTGCCGAAGCTGCACCTCAATCCCGA---GGTCACC 1832 Query 197017 --TATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCG 197074 | | |||| | || ||||| ||| |||| | |||||||| |||||||||||| Sbjct 1833 GATTTGTTCGGCTTCACCTTCGACGACATCGAGATCCATGGCTACGACCCGCATCCGGCG 1892 Query 197075 ATTAAAGCCCCGGTGGC 197091 || || || |||||||| Sbjct 1893 ATCAAGGCGCCGGTGGC 1909 >seq10726 Length=1340 Score = 172 bits (190), Expect = 8e-38 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 196155 TCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAAC 196214 ||||| |||||||||||||| || | || || ||||||||||||||||| ||||||| Sbjct 20 TCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAAC 79 Query 196215 TCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCA 196274 | || ||||| || ||||| || || |||||||||||||| || || |||||||| ||| Sbjct 80 TGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATCG 139 Query 196275 AGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACC 196334 |||||||| |||||| || |||||| |||||||||| ||| ||| ||| Sbjct 140 GCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGCGACC 199 Query 196335 TGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | || ||||| ||||| ||||||||||| Sbjct 200 TCGGCCCGGTCTACGGCAAGCAGTGGCG 227 Score = 96.9 bits (106), Expect = 5e-15 Identities = 211/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || ||||| || ||||| || | || || |||||||| || |||||||||||||| Sbjct 412 TGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGC 471 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899 ||||| |||||| |||||||||||||| || || | ||| |||||| || Sbjct 472 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGG----CCTGGGCGTGGGCGACTT 527 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 ||| || ||||||| ||| | || || || || | || |||| || || Sbjct 528 CGTGCATACGCTGGGTGACGCGCACCTGTATTCGAACCATTTCGAGCAGGCCCGCGAGCA 587 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG-TA 197018 |||||| ||| ||||| ||| |||||| ||| || | ||| | | ||| | Sbjct 588 GCTGTCGCGTGAACCGCGCGCGCTGCCGAAGCT-GTGGTTGAACCCGGAGGTGACCGACC 646 Query 197019 TCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTA 197078 | |||| | | | ||||| ||| || | | |||||||| ||||| ||||| || | Sbjct 647 TGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCGCACCCGGCCATCA 706 Query 197079 AAGCCCCGGTGGC 197091 | || |||||||| Sbjct 707 AGGCGCCGGTGGC 719 >seq23650 Length=538 Score = 161 bits (178), Expect = 2e-34 Identities = 216/298 (72%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCT-G 196124 |||| | ||||||| ||||| | || | |||||| | ||| ||| ||||| | Sbjct 317 CATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGGC-ACGCCAAAGAACG 259 Query 196125 ACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAG 196184 | || |||||||| || || | ||| | | ||| |||||||||||| | ||||| | Sbjct 258 ATCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGG 199 Query 196185 ACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGC 196244 | || || ||||||||||| || ||| |||| | || || |||||||||||||||| Sbjct 198 AAGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGC 139 Query 196245 TGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCT 196304 | |||||||| | || |||||||||||| || ||| || || ||||| || | Sbjct 138 TCTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTT 79 Query 196305 GGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || |||| |||||| | ||| ||| | ||||| || ||||| |||||||||||||| Sbjct 78 GGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCG 21 >seq10022 Length=1431 Score = 150 bits (166), Expect = 3e-31 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || |||||||| ||||| || || || || ||||| || || |||||||||||||| Sbjct 569 TGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGC 510 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903 ||||| |||| | |||||||||||||||||| || ||| | |||||| ||| | Sbjct 509 TACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGACTTCATC 450 Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963 ||||| ||||| || |||||||||| ||| || || ||||| | |||||| Sbjct 449 TGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGGTGGCGCTGCAGCTG 390 Query 196964 TCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTTC 197023 || || ||| |||| || |||||| ||| ||||| || | |||||| Sbjct 389 TCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCATCTTC 330 Query 197024 GATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCC 197083 || ||| | ||||| |||||||| || |||||||| | || ||||| || || || Sbjct 329 GACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCATCAAGGCA 270 Query 197084 CCGGTGGC 197091 |||||||| Sbjct 269 CCGGTGGC 262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 196117 CAAAGCTGACCGTACCGGCACAGGCACTA----CGTCCTATCTCGGCGCACAGATGCGCT 196172 ||||| || || || ||||| ||||| | |||| | |||| |||||||| | Sbjct 1020 CAAAGGCGATCGCACGGGCACCGGCACGAAAAGCGTCTT----CGGCCACCAGATGCGGT 965 Query 196173 TCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCA 196232 |||| ||| | || || || |||||||| || || |||||| | || || ||||||| Sbjct 964 TCGACCTGAACGAAGGCTTTCCGCTGGTGACGACCAAGAAAGTGCACCTCAAATCCATCA 905 Query 196233 TTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACG 196292 | ||| ||||||||||||||| ||| || ||| | | | ||||| || | Sbjct 904 TCGTGGAATTGCTGTGGTTCCTCACCGGCTCCAGTGACAACCACTGGCTGAAGGAACGGG 845 Query 196293 GTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTA 196352 | || | |||||| |||| |||||| || ||| ||||||| || || ||||| Sbjct 844 GCGTGACGATCTGGGACGAATGGGCGCGCGCGGACGGCGACCTGGGCCCCGTCTACGGCG 785 Query 196353 AGCAGTGGCG 196362 ||||||||| Sbjct 784 TGCAGTGGCG 775 >seq29161 Length=379 Score = 143 bits (158), Expect = 4e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| || || ||| | | | ||| | |||||||||||||| ||| Sbjct 214 GACCGTACCGGCACCGGTACCTACAGCGTGT-TCGCCCACCAGATGCGCTTCGACCTGGC 156 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 ||||| || || ||||| ||||| ||||| ||| || || |||||||| || | Sbjct 155 CGACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCACGAGTT 96 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| | || ||||||||||||||||||||||| ||||| || || || Sbjct 95 GCTGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTACGCAT 36 Query 196303 CTGGAACGAGTGGGCGAACGA 196323 |||| |||||||||| |||| Sbjct 35 CTGGGACGAGTGGGCCGACGA 15 >seq10355 Length=1388 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCT-CGGCGCACAGATGCGCTTCGATCTGCA 196182 || || ||||| || ||||| || || ||| |||| |||||||| |||||||| Sbjct 1245 GATCGCACCGGTACGGGCACG-CGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTC 1303 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 ||| || |||||| || | ||||| ||||| || |||||||| |||||||| ||||| || Sbjct 1304 AGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAGCT 1363 Query 196243 GCTGTGGTTCCTCAACGGGGACACC 196267 |||||||||||| || || |||||| Sbjct 1364 GCTGTGGTTCCTGAAGGGCGACACC 1388 >seq776 Length=11329 Score = 114 bits (126), Expect = 2e-20 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || ||||| || ||||| || ||||| || ||||| || || || ||||||||||| Sbjct 10542 TGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 10601 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTT 196903 ||||| |||||| |||||| |||| || || || || |||||| ||||| Sbjct 10602 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGCAGGTGGGCGACTTCGTC 10661 Query 196904 TGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCTG 196963 ||||| || || ||| |||||||||| ||| ||| | ||||| || |||||| Sbjct 10662 TGGACCGGTGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 10721 Query 196964 TCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTTC 197023 | || | || || | ||||||||| ||||| ||| || ||| |||||| Sbjct 10722 GCGCGCCAGCCCTTCGCCTACCCGACGCTGCAGATCAAGCGCCGGCCCGACTCCATCTTC 10781 Query 197024 GATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCC 197083 | ||| | | ||| |||||||| | || |||||| | | || | | || || ||| Sbjct 10782 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCC 10841 Query 197084 CCGGTGGC 197091 || ||||| Sbjct 10842 CCCGTGGC 10849 Score = 105 bits (116), Expect = 1e-17 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| ||||| | | | | ||||| |||||||||||||| ||| Sbjct 10119 GACCGTACCGGCACGGGCACGCGCAGCGTGT-TCGGCCACCAGATGCGCTTCGACCTGTC 10177 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || || |||||||||||||| ||||| | || || |||||||| | ||||| Sbjct 10178 CGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACT 10237 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| ||| |||| ||| | | ||| | || ||| | | || Sbjct 10238 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 10297 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| ||| ||| ||||||| ||||| || || ||| ||||| Sbjct 10298 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 10357 >seq32881 Length=284 Score = 93.3 bits (102), Expect = 7e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || |||||||| ||||| |||||||| || || || || || ||||||||||| | Sbjct 136 TGTCGTGCCAGCTGTACCAGCGCAGTGCGGACATCTTTCTGGGCGTGCCGTTCAACATTG 77 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGT 196898 || ||||| |||||| |||||||||||||| ||| || | | ||||| | Sbjct 76 CGAGCTACGCCCTGCTGACGCACATGGTGGCGCAGCAGTGCGACCTTCAAGTTGGCGACT 17 Query 196899 TCGTTTGGACTGGCGG 196914 || | ||||| ||||| Sbjct 16 TCATCTGGACCGGCGG 1 >seq11529 Length=1246 Score = 93.3 bits (102), Expect = 7e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 394 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 453 Query 4266 CAGGGTCGCCACATTT 4281 ||| | ||||||||| Sbjct 454 CAGAGGAGCCACATTT 469 >seq4223 Length=3159 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 1405 GTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 1464 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 1465 CCGTTCCGCCA 1475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771199651933080