Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq14778 91.5 2e-13 seq10753 87.8 2e-12 seq7046 87.8 2e-12 seq6689 86.0 8e-12 seq25200 84.2 3e-11 seq24155 84.2 3e-11 seq16939 82.4 1e-10 >seq14778 Length=957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||||||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 1 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 60 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 61 TCCGTTATTCTCCA 74 >seq10753 Length=1336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/95 (82%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 165728 CGCA-ATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGT 165782 |||| ||||||| ||||||||| |||| | |||| | ||||||||||| ||| |||| Sbjct 580 CGCACATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGT 639 Query 165783 TAGTAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||| | |||||||||||||||||||| |||||| Sbjct 640 GAGT-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 673 >seq7046 Length=2020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/95 (82%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 165728 CGCA-ATGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGAC----GTGT 165782 |||| ||||||| ||||||||| |||| | |||| | ||||||||||| ||| |||| Sbjct 666 CGCACATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGT 725 Query 165783 TAGTAGCACCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||| | |||||||||||||||||||| |||||| Sbjct 726 GAGT-CCTCCGTGAGTTCGAATCTCACCGCTTCCG 759 >seq6689 Length=2121 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 183355 GGGCGATTAGCGCAGCGGTAGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCGAATC 183414 ||| | ||||| ||||||||| || |||||||||||||||| ||||||||||||||| | Sbjct 1971 GGGTGCTTAGCTCAGCGGTAGAGCGTCTCCTTTACACGGAGAGGGTCGGGGGTTCGAAAC 2030 Query 183415 CCTCATCGCCCA 183426 ||||| | |||| Sbjct 2031 CCTCAGCACCCA 2042 >seq25200 Length=489 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 220 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 161 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 160 CTCCGATATTCTCCA 146 >seq24155 Length=522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 225 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 166 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 165 CTCCGATATTCTCCA 151 >seq16939 Length=822 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 183352 CCAGGGCGATTAGCGCAGCGGTAGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCGA 183411 || ||| | ||||| ||||||||| || |||| ||||||||||| |||||||||||||| Sbjct 604 CCCGGGTGCTTAGCTCAGCGGTAGAGCGTCTCCCTTACACGGAGAGGGTCGGGGGTTCGA 663 Query 183412 ATCCCTCATCGCCCA 183426 | |||||| | |||| Sbjct 664 AACCCTCAGCACCCA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633798317886000