Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq4132 156 5e-33 >seq4132 Length=3213 Score = 156 bits (172), Expect = 5e-33 Identities = 352/522 (67%), Gaps = 28/522 (5%) Strand=Plus/Minus Query 146808 TTGATGAAGTCTATCAATTTGCTGCAGACATGGGTGGCGCAGGTTACATCTTTACTGATG 146867 |||||||||| |||||| | |||||||| ||||| || ||||||||||||||||| | Sbjct 1816 TTGATGAAGTATATCAACTGGCTGCAGATATGGGAGGAGCAGGTTACATCTTTACCGGAA 1757 Query 146868 AACACTCTGCAGACATCATGCATAATTCTGCCACAATCAATCTAAATCTTTTGGATGCGA 146927 | || ||| | | ||||||||||| || | || ||||| ||| | | | | Sbjct 1756 ATAACGATGCTAATGTAATGCATAATTCAGCAGCGATAAATCTTAATGTAGCAAAGGAGT 1697 Query 146928 TTGTGAAGACCAAAGGTATGGGACGTAAAGTTCCTAAGATTTTCTATTCATCTTCTGCTT 146987 ||| || | |||| | ||||| ||||| |||| || ||||| | Sbjct 1696 CTGTAAATAAAAAAGTCAAA------AAAGT-------ATTTT--ATTCTTCCTCTGCCT 1652 Query 146988 GCATTTATCCTTC-TACAATCCAAGAAGATACGGATAATCCTGGTTTGCGTGAAGAG--- 147043 |||| ||||| ||||| |||| ||| | ||||| || ||||||| Sbjct 1651 GCATGTATCCGGAATACAA-CCAATTGGATCCTCTGAATCCAAATT---GTGAAGAAAGT 1596 Query 147044 TATGCATATCCAGCTAACCCAGACTCTGAATATGGATGGGAAAAACTTTTCTCTGAAAGA 147103 | ||||||||| || || || || || ||||| || ||||||||| | || |||||| || Sbjct 1595 TCTGCATATCCGGCAAATCCTGATTCAGAATACGGTTGGGAAAAATTGTTTTCTGAACGA 1536 Query 147104 CTTTATCTTGCATACGGGCGTAACTACAATCTGGATATTAGGATTGCTCGTTACCATAAC 147163 | | | | || | | ||||||||||| ||| || | ||||| | | ||||| Sbjct 1535 TTATTTTTAGCTTTTAACAGAAACTACAATCTTGATGTTCGTATTGCAAGATTTCATAAT 1476 Query 147164 ATTTATGGACCTGAAGGAACCTGGGACGGTGGAAAGGAGAAAGCTCCCGCAGCTATGTGT 147223 |||| ||| || |||| |||||| | || || ||||| ||||| || || || ||||| Sbjct 1475 ATTTTTGGTCCGCAAGGCACCTGGAAAGGCGGTAAGGAAAAAGCCCCGGCTGCAATGTGC 1416 Query 147224 CGAAAGGTTGCGTCCATCT-TGGGTGATTCGGGAGAAGTTGAATGTTGGGGTGATGGAGA 147282 |||||| ||| | | || || | ||| ||| ||||| ||||| || ||| Sbjct 1415 AGAAAGGCTGC-TGAAGCTCCGGAAGGTTC---TGAAATTGAAGTATGGGGAGACGGACT 1360 Query 147283 ACAAACTCGATCATTCTTGTACATCGATGATTGCATCGAAGC 147324 |||||| || || || || || | ||||| || ||||||| Sbjct 1359 ACAAACGCGTTCCTTTTTATATGTAGATGAGTGTGTCGAAGC 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559079525527600