Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq35445 102 1e-16 seq14573 102 1e-16 seq14849 100 4e-16 seq14778 96.9 5e-15 seq35467 93.3 6e-14 seq25200 93.3 6e-14 seq24155 93.3 6e-14 >seq35445 Length=682 Score = 102 bits (112), Expect = 1e-16 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||||||||| ||||| |||||| ||||| ||||||| Sbjct 358 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 417 Query 142852 TCCGTTATTCTCCACCAA 142869 ||| |||||||||||||| Sbjct 418 TCCCTTATTCTCCACCAA 435 >seq14573 Length=973 Score = 102 bits (112), Expect = 1e-16 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 652 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 593 Query 142852 TCCGTTATTCTCCACCAA 142869 ||||||||||||||| || Sbjct 592 TCCGTTATTCTCCACGAA 575 >seq14849 Length=952 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 332 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 391 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 392 TCCGTTATTCTCCAC 406 >seq14778 Length=957 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 1 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 60 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 61 TCCGTTATTCTCCAC 75 >seq35467 Length=503 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 175 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAATCCGTCTG 116 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 115 GCTCCACCA 107 >seq25200 Length=489 Score = 93.3 bits (102), Expect = 6e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 220 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 161 Query 142851 GTCCGTTATTCTCCAC 142866 |||| |||||||||| Sbjct 160 CTCCGATATTCTCCAC 145 >seq24155 Length=522 Score = 93.3 bits (102), Expect = 6e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 225 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 166 Query 142851 GTCCGTTATTCTCCAC 142866 |||| |||||||||| Sbjct 165 CTCCGATATTCTCCAC 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691152027893640