Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq7166 262 1e-67 seq5795 262 1e-67 >seq7166 Length=1408 Score = 262 bits (290), Expect = 1e-67 Identities = 267/342 (78%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| ||| | ||||||| |||| ||| |||| | Sbjct 671 GCGTAAGATTAGGTAGTTGGTAGTTTAAAAGACTACCAAGCCGACTATCTTTAGCTGGTT 730 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 731 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGC 789 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || ||||| |||| |||||| || ||||| || ||| Sbjct 790 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAGAA 849 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | || ||| Sbjct 850 GGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAGAAGAA 909 Query 400 GCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | ||||||||| || |||||||||||||||||||||||| ||||| ||| |||| || Sbjct 910 GTCCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGGGCGAGCATTATTCG 968 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||||| ||||||||||| |||||| Sbjct 969 GAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 1009 >seq5795 Length=3727 Score = 262 bits (290), Expect = 1e-67 Identities = 267/342 (78%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| ||| | ||||||| |||| ||| |||| | Sbjct 1652 GCGTAAGATTAGGTAGTTGGTAGTTTAAAAGACTACCAAGCCGACTATCTTTAGCTGGTT 1593 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 1592 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGC 1534 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || ||||| |||| |||||| || ||||| || ||| Sbjct 1533 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAGAA 1474 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | || ||| Sbjct 1473 GGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAGAAGAA 1414 Query 400 GCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | ||||||||| || |||||||||||||||||||||||| ||||| ||| |||| || Sbjct 1413 GTCCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGGGCGAGCATTATTCG 1355 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||||| ||||||||||| |||||| Sbjct 1354 GAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497465335808