Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq2693 98.7 2e-17 seq4776 87.8 4e-14 seq6479 80.6 6e-12 seq1300 78.8 2e-11 >seq2693 Length=4522 Score = 98.7 bits (108), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 1566 CCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGT-TGAAAAGT- 1623 ||||| ||||||||||||| | ||||| ||||| | || || || | || | || Sbjct 1613 CCAAAGGTGCACACGCACACGATTCTTGAAGATCTTGACTAC--GATGCAATGGATCGTC 1556 Query 1624 TGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGT 1683 | || || | || | ||||| |||||||||||||| || || | || |||||||||| Sbjct 1555 TTGGTATCAATTTTATCAAGACTATCTGTGACGAAGCCGGCTTTGCTGTCGACCAAAAGT 1496 Query 1684 ACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACG 1743 |||||||||||||| ||||| || || || ||||| | |||| ||||||| | | Sbjct 1495 ACAAGACGCCGCAAACAGCTCGAACAACGGTGTTGGTTACCAGTAACTACACCATCCAAG 1436 Query 1744 ATGTGATTCCGGAAGACATGCCAGGACG 1771 | || | | ||||| |||||||| Sbjct 1435 AACTGCTCATG---GACATTCCAGGACG 1411 >seq4776 Length=3322 Score = 87.8 bits (96), Expect = 4e-14 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| || || || ||||| ||||||||| | ||| | || |||||||||||| Sbjct 935 TACAAGAAAAACTTGTCGAACCGGTTCTTCGACCTTTACGATGACAAGGTGCACACGCAC 994 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAG 1643 || | | ||||| ||||||| || ||||| | || ||| | || | ||| Sbjct 995 ATCATGTTGGAAGATCTCGATCATGAAGCGATTGAACGTCTTGGTGTCAACTTTATCAAG 1054 Query 1644 ACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACG 1691 || | ||||||||||||||||| | || ||||||||||||||| || Sbjct 1055 ACACTGTGTGACGAAGCTGGTTTTGCGGTCGACCAAAAGTACAAGTCG 1102 Score = 86.0 bits (94), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 959 AGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATC--GTCCTTACCAA 1016 ||||||||| | |||| || ||||| || || || |||| | | |||| ||||| Sbjct 361 AGGAAAGTTTCGATACGTTCTTGTCGGAGGTGTTGAAGTCGGC-ACCAAGTCCA-ACCAA 418 Query 1017 ACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAG 1076 ||||||| ||| | ||||||||||| || || || ||||| ||||||||| | ||| Sbjct 419 GACGACTACCAAATCGAACACGTGCACGTCGCGCTCGTCTACAACAACCGCGTCACCAAG 478 Query 1077 AACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGT 1136 | | || || || || ||||||||||| ||||| || || ||||||||| | Sbjct 479 TCAAGCATCCTCAAAAACCTCGGCATCAAGCAAGGGAATGGTTACTATCTTGTTCCATGG 538 Query 1137 AAC 1139 ||| Sbjct 539 AAC 541 >seq6479 Length=6311 Score = 80.6 bits (88), Expect = 6e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1635 TTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCG 1694 ||| | ||||| |||||||| ||||| || || | || || |||||||||||||||||| Sbjct 1775 TTCATCAAGACTATCTGTGATGAAGCCGGCTTTGCTGTCGATCAAAAGTACAAGACGCCG 1834 Query 1695 CAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 ||| || || ||||| || ||||| || |||| |||||| Sbjct 1835 CAAACTGCGCGAACCACGGTGTTGGTTACTAGTAACTACACCAT 1878 >seq1300 Length=3986 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/168 (70%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| || ||| || ||||| ||||||||| | || | || |||||||| ||| Sbjct 2745 TACAAGAAAAATTTGTCGAACCGGTTCTTCGACCTCTATGATGACAAGGTGCACACTCAC 2686 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAG 1643 || | | ||||| |||||||| || | ||| | || || | || | ||| Sbjct 2685 ATCATGTTGGAAGATCTCGATCACGAAGCGATCGAACGTCTTGGTGTGAACTTTATCAAG 2626 Query 1644 ACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACG 1691 || | || ||||||||||||||| |||| ||||| ||||||||| || Sbjct 2625 ACACTTTGCGACGAAGCTGGTTTCGCAGTGGACCAGAAGTACAAGTCG 2578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896429871040