Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq6130 154 6e-32 seq7620 127 9e-24 seq2274 93.3 2e-13 seq4093 91.5 6e-13 seq2508 91.5 6e-13 seq8951 84.2 9e-11 >seq6130 Length=72722 Score = 154 bits (170), Expect = 6e-32 Identities = 351/510 (69%), Gaps = 20/510 (4%) Strand=Plus/Plus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| ||||| | || || ||||||| ||| | ||||||||| |||| Sbjct 38163 AGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCT 38222 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 |||||||||| | | | ||| || ||| |||| ||||||||| ||| | ||| | Sbjct 38223 GCCGCGTGAGCACGGCGCGCGGGCCTCTCGCTCGCGCGTGCATCTTGTCCATGACCATGT 38282 Query 448779 GCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCC 448837 ||||||| ||||| || ||| |||| | || || ||| |||| | ||| |||||| Sbjct 38283 GCTTGAGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCC 38341 Query 448838 GTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC 448893 || ||| ||| | | | ||| |||||| || | || | || | | | ||| Sbjct 38342 GTGATGCCCGACGTCAGG-TAGTCCTTGCCCGCGTAGTTGAAGCCGTGGCGCACGAGCTC 38400 Query 448894 ---CATGTAGTC---CATGAGCTCGGCCACGGAG-AGGTC-CGAA-AAGGCCGTGCCGTC 448944 | | |||| || | |||||| | | | | | || || |||||||||| Sbjct 38401 GCGCGAGCAGTCGAGCACGTTGTCGGCCGTGCCGTACGCCTCGCCGAACGCCGTGCCGTA 38460 Query 448945 CT-GCGGCAAGCCGCTCT-CACAGCCCGTGATGGCCTGGAGGGCCTCGAGCAACATGGCG 449002 | ||||| |||||| ||| ||| | || || || | ||||| || | || || Sbjct 38461 CGCGCGGCG-GCCGCTGAGCAC-GCCTGCCTTGCCCGCGATGAGCTCGATCATCTTGCCG 38518 Query 449003 TAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCC 449062 |||||||| |||| || | |||||||||||||||| |||||| ||||| | Sbjct 38519 ACCGTCATGCGGCTCGGGAAGCCGTGCGGGTTCATGATGAGGTCGGGGCAGACGCCGTCG 38578 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 ||||||| ||||||||||| ||||| | | |||| |||||||||||||||||| Sbjct 38579 TCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGG 38638 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 || |||| ||||||||| || ||||||| Sbjct 38639 CGACTGCTGAACTTGTCGCCGATCTCGGGC 38668 >seq7620 Length=7053 Score = 127 bits (140), Expect = 9e-24 Identities = 179/246 (73%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 741 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 682 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAAC---CAACGCCACCATGACACGGTG--CGGCA 222586 ||||||||| || |||| ||||| | | | ||| | | ||||| | ||||| Sbjct 681 GACTTTGGGCTCTCGCGCTTCAAGAACAAGGTCTACGGCG--AGTACACGTTCGTCGGCA 624 Query 222587 CGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACG 222646 |||||| |||| |||| |||||| ||||| ||| ||| ||||| |||||||||||||| Sbjct 623 CGCCGTTCTGGGCGGCGCCCGAGGTCATCCGCCATGAGAGCTACGACGAGAAGGCCGACG 564 Query 222647 TCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGGC 222705 ||||| |||| |||| | | |||||| || || | || ||| ||| |||||||| Sbjct 563 TCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTATGCGGGG 505 Query 222706 CTCGAC 222711 ||| || Sbjct 504 CTCAAC 499 >seq2274 Length=30467 Score = 93.3 bits (102), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 349059 TCATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCT 349118 ||||||||| || ||| || ||||||||| || | |||| || || ||||||||| Sbjct 24473 TCATCTTGGACG---CGTTGATAATCTCCTTCAGACGCGGCACACCGAGCGTCACGTTCA 24529 Query 349119 TGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGA 349178 | |||||| || ||||||||||| |||| ||| |||| ||||||| ||||||| || Sbjct 24530 TACTCGCGACACCAGCAAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCGGGCTCGGAGA 24589 Query 349179 TGCACTG 349185 | |||| Sbjct 24590 TCGACTG 24596 >seq4093 Length=8751 Score = 91.5 bits (100), Expect = 6e-13 Identities = 186/267 (70%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 222426 GGCCCTCGGCGTGGCCTACCTCCACTCGC-GCACCCCGTCCATCATCCACCGCGACCTCA 222484 |||| || | | || ||||| ||| ||| ||| ||||| || | ||||||||| ||| Sbjct 2300 GGCCGACGCCATCGCGTACCTGCACACGCAGCAGCCCGTGG-TCGTGCACCGCGACGTCA 2242 Query 222485 AGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG--AAGGTGGCCGACTTTGG-GT 222541 || || ||| |||| || | | || | ||| | ||| | | |||||||| || Sbjct 2241 AGAGCAAGAACGTGCTGCTGAAC--CGCCGCGGCGAGGCCAAGCTCTCGGACTTTGGCGT 2184 Query 222542 TCGCGCGGATCAAGGAAACCAACGCCACCATGACA--CGGTG-CGGCACGCCGTACTGGA 222598 || || | | | | || || |||||||| ||| | |||||||| | ||||| Sbjct 2183 GAGC-CGCAAGACGTCCAACAGCGAGACCATGACCAGCGGCGTCGGCACGCTGCTCTGGA 2125 Query 222599 CGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCG 222658 ||||||||||||||||| | || |||||| |||||| ||| ||| | |||||||||| Sbjct 2124 CGGCACCCGAGATCATCCGCGGTGACCGCTACTCCGAGATGGCGGACATGTACTCGTTCG 2065 Query 222659 GCATCATCATGTGGGAGGTCATCACGG 222685 || || | | | |||| || ||||| Sbjct 2064 GCGTCGTGCTTTCGGAGCTCGACACGG 2038 >seq2508 Length=58275 Score = 91.5 bits (100), Expect = 6e-13 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 7720 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 7779 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | | | || ||||||| ||| | | |||| ||| | | Sbjct 7780 TGGCGACATGCCCGACTCCGTAAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 7836 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAA 449163 ||||||||||||||||||||| |||||||||| || |||| || || ||| Sbjct 7837 GACGCCCTTCTGGCCGTGGCGCGACGAGAACTTGTCACCGATGACGGGGTTTCGGCAGAA 7896 Query 449164 GCGCAGC 449170 ||||||| Sbjct 7897 GCGCAGC 7903 >seq8951 Length=37599 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 222580 TGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639 ||||||||| || | |||| ||| || ||| | || || ||| |||||||||||| Sbjct 21438 TGCGGCACGACGCAGTGGATGGCGCCAGAGGTGCTCGCCGCCGAGAAGTACACCGAGAAG 21497 Query 222640 GCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTA 222698 |||||||||| |||||||||| || | |||||| |||||||| || | |||| || Sbjct 21498 GCCGACGTCTTCTCGTTCGGCGTCGTGTGTTGGGAGATCATCACGCGCGCGTGTCCGTA 21556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084493159079616