Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12 293 2e-74 seq6 149 5e-31 >seq12 Length=344370 Score = 293 bits (324), Expect = 2e-74 Identities = 1130/1740 (65%), Gaps = 58/1740 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 |||||||||||||||||||||| || || | | | || |||||||| || ||| Sbjct 161614 TCGACCGTGAACTGGATCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTC 161673 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT--TCGGCT 65195 ||||| || ||| || ||||| ||||| || | | | |||| | || |||||| Sbjct 161674 TTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACG-TCAGCTTGC-TGATCGTCGGCT 161731 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 |||| | |||| || | |||||| || || ||||| || || || || |||| Sbjct 161732 CGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATGTAGGCGCCGCGGTCGGCGGCCA 161791 Query 65256 TGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | || | | || | | | | | |||||||| || ||||||||| | | | || Sbjct 161792 TATCGAGCA--CGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT-CTCCTTCACGG 161848 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAATAATGCGATTACGC 65371 || || ||| | | || ||| ||||| || | |||||| | | | |||||| Sbjct 161849 CATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGA-TCTGGTTACGC 161907 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC- 65430 | | | ||| | || | ||||| || | | | | || || ||| | || Sbjct 161908 ACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATNAGGT-AC--TTGTTCACG 161964 Query 65431 -TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 | | ||||||||| | || || || ||| || ||||||| ||||| || || | Sbjct 161965 ATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATC 162024 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 || || ||||||| || || || || || || || || ||||| || |||| || || Sbjct 162025 GACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGC 162084 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACAT 65604 ||||| |||| |||| | | | | || ||| || || |||||| ||| | Sbjct 162085 GAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGA-GCG---CGGCCCAGTCCCAGA- 162139 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGG 65664 || ||||| | | ||| |||||| || | || | | | || | || | || Sbjct 162140 -GGCCGGACGTCGGCGTG-ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGG 162197 Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGA 65723 ||| || | | || ||||| || | |||||| || || | || | || ||| | Sbjct 162198 TGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGAGGCCTCCA 162256 Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCT 65783 ||| | || || | |||||||| ||| || || || || ||||| ||||||| Sbjct 162257 TCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGNGCCTCGTCGCTCT 162316 Query 65784 CGTACGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 | ||| | || ||||| |||| || | ||| || ||||| || || || || ||||| Sbjct 162317 CAAACG-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATC 162375 Query 65843 GGACGATGACGCAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 || || || |||| ||| || |||| |||| || | |||||||| ||||| ||||| Sbjct 162376 GGGCGGTGGCGCAGGTTGCTTCG-CTCGGCCTCGGGGATCGGGTAGTAGTTGATNTCGAT 162434 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAA 65961 | || | ||||| || || || | ||| |||| | ||| Sbjct 162435 GACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGAT--GTCGTACAGCTTC--------- 162483 Query 65962 ATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAG 66021 || | | ||| || || || ||||||||||| || || | || ||||| Sbjct 162484 ---TTGAAGTCGAA-GGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAG 162539 Query 66022 GTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACT 66081 |||||| || || | |||||| || | || ||||||| | ||| ||| || || || Sbjct 162540 GTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCT 162599 Query 66082 GCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACAT 66141 |||| || ||||| | ||||| || || |||||| || || | |||||||||| Sbjct 162600 CGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAG 162659 Query 66142 CATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA-GC-GCGT 66199 ||||||||| ||||| ||||| | || ||||| | ||| ||| ||| || || ||| Sbjct 162660 CATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGC 162719 Query 66200 GCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 || | ||| | | | ||| | || | ||| ||||| || | ||| || ||||| Sbjct 162720 GCGG--ATCGT-CTTGCGCGCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGAA 162776 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 |||||||| | | |||| || || || || || | ||| ||| || Sbjct 162777 CTCGTCACCCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTC 162836 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | || || || ||| || ||||| || ||||| | |||||||| ||||| Sbjct 162837 GCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATC 162896 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 || || || ||| ||| ||||||| || || | |||||||||||| |||||||| Sbjct 162897 ACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTC 162956 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||| ||||| || || || || || |||||||||||| | || ||||||||||| || || Sbjct 162957 GGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATC 163016 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 || || || || | |||||| || |||| ||| || ||||| ||||| || ||| Sbjct 163017 CACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCC 163076 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATAC 66617 || ||||| |||| || | || || || || | ||| || | | |||||| | Sbjct 163077 GTTCGTGCCACGGATGTACGA-GTTNGTCGCGCGGATGTTGTGCACGCTGACACCAATGC 163135 Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGG 66677 | |||||| ||| |||||| || || | | || | ||||| || || | Sbjct 163136 CGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCG 163195 Query 66678 AGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCG 66737 |||| |||| |||| || ||| |||| || || || || || ||| |||| Sbjct 163196 AGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGT 163255 Query 66738 AGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 ||| || || || || |||||||| ||| | | |||||||| | ||||||||||| Sbjct 163256 TGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGA 163315 >seq6 Length=416345 Score = 149 bits (164), Expect = 5e-31 Identities = 369/550 (67%), Gaps = 12/550 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGA 61154 |||||||| ||||| || || ||||||||||| || ||| |||| | || || || Sbjct 381723 ATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTGCAC-GA 381781 Query 61155 CATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | || |||||| | | || | || | | || || || || ||| | || Sbjct 381782 CCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTGCTCGC 381841 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG 61272 |||||| || || || || |||||||| ||||| | | |||| ||| |||| Sbjct 381842 GTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGNGATGAAC--TTCA-GCAG 381898 Query 61273 -GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 |||||||| || | ||||||||||| |||||||||||||||||||| || ||||| | Sbjct 381899 CGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAACAT 381958 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||||||| ||||| | |||||||| |||||||||| ||| | | | | | || Sbjct 381959 CCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGTAGAAGA 382018 Query 61392 ACGA--TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449 || | || | | ||||||||||||| || ||| || ||| || | ||||| Sbjct 382019 ACCACCTTCTNCGCGACCATCGAGACGATCCCCTGTGTGCAGAAGAAGGCCCACTGGGCG 382078 Query 61450 TTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 |||| ||| | | | || || | || | || || | | || || || | Sbjct 382079 CTCAAGTGGTGCGACTTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGC 382138 Query 61509 GGTCGAGGGTGTATT-TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 |||||||| | || ||| || ||||| | | ||||| ||| | ||||| || | Sbjct 382139 TGTCGAGGGCATCTTACTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCG 382198 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | |||||||| || || | |||| || ||| | || || || |||||||| | || | Sbjct 382199 GCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCACT 382258 Query 61628 GTGATTTTGC 61637 | || || || Sbjct 382259 GCGACTTCGC 382268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562224330880