Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq472 212 1e-51 seq863 161 2e-36 seq812 125 2e-25 seq813 96.9 8e-17 seq211 95.1 3e-16 seq98 89.7 1e-14 seq662 82.4 2e-12 >seq472 Length=20018 Score = 212 bits (234), Expect = 1e-51 Identities = 524/791 (66%), Gaps = 16/791 (2%) Strand=Plus/Plus Query 873 GACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAAGATCTCGAGGCTCTCCTT 932 |||||| |||||||||||||||| || || || ||||| ||||| | || || || Sbjct 637 GACCGTGAGTGGGACGCACGCTTTAACGTGCCGACCGAGGAAGACTTGGAACTCCTTCTA 696 Query 933 CTCAATGTCAAGAGCGAAGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTA 992 || ||| ||| || ||| | ||| |||| | | ||| |||||| || | Sbjct 697 CTGTGTGTGAAGGAAGAGTATGAACGAGGCAAGTACAAGTACGTACTCGTCTCGGGCATC 756 Query 993 GAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTCTG 1052 || |||| | |||| | | |||||||| || ||||| ||| | | Sbjct 757 GAAGTCGGGACACAGCCTTTTCGAGACGACTACCTGATGCGCCACGTACACTGCTGTTTC 816 Query 1053 GTGTACAATAACCGCGTCTCGAAGAACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGC 1112 | |||||| |||||||| |||| | || | |||||||| || | |||||||| || Sbjct 817 GGGTACAACAACCGCGTGAGCAAGAGCGCCATTCTGAAGAACCTCAAGATCAAGCAGGGT 876 Query 1113 AATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGATCAT 1172 || || ||||| || || || || || || |||| | |||| ||| || ||| Sbjct 877 AACGGATATTATCTGGTGCCCCGCAATCGAAGCTTGCCCTACAAAGGATGGCGTGACCAT 936 Query 1173 CACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAG---CTGTATGAGTACGGCACT 1229 ||| | ||| | | |||||| || ||| || | | || |||||| | ||| Sbjct 937 CACGCAAAGGAAGACACGAAAGTCGACGCCAACGAGACGATTCTCTATGAGAATGGCGTG 996 Query 1230 CTACCTGCTGACAAACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAGGAAAAG 1289 || || ||||| | | |||||||| ||| | | ||| | || |||||| Sbjct 997 CTCCCGCAGGACAAGGCTGTAGCCGAAGCTCAAGTCACCTTGCGGTCGGCGGAAGAAAAG 1056 Query 1290 AAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGGACGCGAA 1349 ||| |||||||||| || |||||| ||||||| |||| ||||| |||||||| || Sbjct 1057 AAGCGAAAACTTGATGACATCATCATGGAGATGAGAGGTATGATTGAAGAAGGCAAAGAT 1116 Query 1350 GAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTGAAAGCT 1409 || || || |||| || || || | || || |||| ||||| |||||| | || || Sbjct 1117 GAAGAGGCGTTCAAGAAATTCCCAAGGAATTANCTGACGTATGGTGAAAAGATCAAGTCT 1176 Query 1410 ATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCTTACT 1469 || || ||| ||| | |||||| ||||| ||||| || | ||| | Sbjct 1177 CTGGTC-------GTCCAGACCTGTTCAAGGCTAACGGAGACCCCCATGTGTGGTTGTGG 1229 Query 1470 GGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACAAC 1529 ||| ||| ||| | | || || || | || || ||||| || | || |||||| Sbjct 1230 GGTCTTCCAGGTACGGATAAATCGGCTCTTATGGGCGTGATCTACCCCGACTACTACAAC 1289 Query 1530 AAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGCTT 1589 ||||| || |||| |||||| ||||||| ||| | | || || ||||| ||||| Sbjct 1290 AAGAACCTAGACACCCGTTTTTTCGACTGCTACAACGAAGAACATCATACGCA-TTGCTT 1348 Query 1590 -CTTCAAGATGTCGATCACACGACG--GTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACC 1646 | |||||||||||||||| ||| || ||||| ||||| ||||||||| | ||| | Sbjct 1349 GATGCAAGATGTCGATCACA--ACGTTGTCGAAAAATTGGGTGTCCAGTTCTTCAAGTCT 1406 Query 1647 ATCTGTGACGA 1657 | || ||||| Sbjct 1407 GTTTGCGACGA 1417 >seq863 Length=3786 Score = 161 bits (178), Expect = 2e-36 Identities = 315/463 (68%), Gaps = 2/463 (0%) Strand=Plus/Minus Query 1281 GAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAA 1340 || || |||||| | || | ||||| || | | |||||||| || ||||||| ||| Sbjct 1270 GAAGAGAAGAAGCGCAAGATCGACGACGTTCTGATCGAGATGCGCGGATTGATCGA-GAA 1212 Query 1341 GGACGC-GAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAA 1399 || | || |||||||| ||| ||||||||| || | || | || || || || Sbjct 1211 GGGTGAAGACGAGGAAGCATTCCGCAAGTTTCCCCGTACGTATCTCCAATACGGCGAGAA 1152 Query 1400 GCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACAT 1459 | | || || ||| | |||||||| ||| |||||||| | || | || ||| | Sbjct 1151 GGTCAAGGCCTTGACCCTTCAGCGTCGCGACAAGCTCAAGAGCGATGGGCATCCGCACCT 1092 Query 1460 CTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGC 1519 ||| | |||| || | |||| ||||| || | || | | |||| Sbjct 1091 TTGGATCCATGGTCCTGCAGGTTGCGGCAAAAGCGCTGTGCTGGCTTTTGTATATCTCAA 1032 Query 1520 GTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACAC 1579 || | || ||||| ||| ||||| ||||||||||||||| | || || || ||||| Sbjct 1031 CTACTTTAAGAAGAACCTGCACAACAAGTTCTTCGACTTGTACGACCCCAACGTCCACAC 972 Query 1580 GCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCT 1639 ||| | | | |||| |||| ||| | | || ||| |||| | | ||||| Sbjct 971 CCACGTCATGTTGGAAGAACTCGACCACGAGGCCGTGGAACGACTGGGCACCAACTTCCT 912 Query 1640 AAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACT 1699 ||||||| ||| |||||||| || ||| | | ||||||||||||||||||||||| || Sbjct 911 CAAGACCACCTGCGACGAAGCCGGCTTCGCCATCGACCAAAAGTACAAGACGCCGCAGCT 852 Query 1700 GGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAAC 1742 | ||||| | ||| | ||| | |||||||||||||||||| Sbjct 851 TACGCGTACAAGCGTCCTTGTCACCTCCAACTTCACCATCAAC 809 >seq812 Length=5368 Score = 125 bits (138), Expect = 2e-25 Identities = 204/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1450 ACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCA 1509 |||| ||| | ||| | | ||| ||| ||| | ||||| | ||||||||| || || Sbjct 3724 ACCCGCACCTGTGGGTGATGGGTTATCCGGGTACAGGCAAAACCGCCATCTTGAAGTTCC 3665 Query 1510 TCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA 1569 | ||||| ||||| |||||||| |||||| | ||| || | || | || | Sbjct 3664 TGTATCCGAAACTGTACAAGAAGAATCTCTTCAACCGATACTTTGATCTATATGATCCGA 3605 Query 1570 AAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAG 1629 | | ||| || || || | ||| |||| | || ||| | || ||||| ||| | Sbjct 3604 AGGAGCATACCCATGTGATGCTTGAAGACCTAGACCACGAAGCCGTCGAAAAATTGAGCA 3545 Query 1630 TCCAGTTCCTAAAGACCATCTGTGACGAAGCTGG-TTTCCCAGTTGACCAAAAGTACAAG 1688 || | || | |||||||||||||| ||||| || ||||||| ||||||||||||||||| Sbjct 3544 TCAACTTTATCAAGACCATCTGTGATGAAGCCGGGTTTCCCA-TTGACCAAAAGTACAAG 3486 Query 1689 ACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATC 1739 | |||||||| || || ||||| ||||| ||| ||||| ||||| Sbjct 3485 TCACCGCAACTCGCCAAGACGACTGTGTTGGTAAGTTCTAACTTTTCCATC 3435 >seq813 Length=5353 Score = 96.9 bits (106), Expect = 8e-17 Identities = 202/292 (69%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 1452 CCTCACATCTGGCTT-ACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCAT 1510 || ||| | ||| || || |||| ||| || | ||||| | ||||| || | ||| Sbjct 2804 CCACACCTGTGGGTTCACGGGTA-TCCAGGCACGGGCAAAACCGCCATTCTGAACTGCAT 2746 Query 1511 CTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAA 1570 |||||| | | ||| || || || ||||| |||||||| | || | || | Sbjct 2745 CTATCCGAAGGCGTTCAAGAAAAACCTCTACAACAAGTTCTTCGATCTTTATGATCCTAC 2686 Query 1571 AGTGCACACGCACATGCTTCTTCAAGATGTCGATCAC-ACGACGGTTGAAAAGT-TGGGA 1628 | ||||||||||| | ||| ||||| | |||||| | | || || || || | | Sbjct 2685 TGACCACACGCACATCATCCTTGAAGATCTGGATCACGAAGCCG--TGCAACGTCTCAGT 2628 Query 1629 GTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAG 1688 || | || | ||||||||||| || ||||| || ||| | || || || |||||||| Sbjct 2627 ATCAACTTTATCAAGACCATCTGCGATGAAGCCGGGTTCGCCGTGGATCAGAAGTACAAA 2568 Query 1689 ACGCCGCAACTGGCTCGTACCA-CTGTCTTGGTCTCTTCCAACTTCACCATC 1739 || || || |||||||||||| |||| |||||| |||| || || || ||| Sbjct 2567 ACTCCACAGTTGGCTCGTACCACCTGT-TTGGTCACTTCTAATTTTACGATC 2517 >seq211 Length=85693 Score = 95.1 bits (104), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 1509 ATCTATCC---TGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAG 1565 |||||||| |||||| ||| ||||| || ||||||||| |||||| | ||| | Sbjct 55833 ATCTATCCGAATGCGTA---CAAGAAGAACCTAAGCAACCGTTTTTTCGACCTCTACGAT 55777 Query 1566 CCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTG 1625 || ||||| ||||| |||||||| |||| |||| ||| || | ||| | Sbjct 55776 GACAAGGTGCATACGCATATGCTTCTGGAAGACCTCGACCACGAAGCGATCGAACGCCTT 55717 Query 1626 GGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTAC 1685 ||| || | || | ||||| | || ||||||||||||||| | || ||||| |||||| Sbjct 55716 GGAATCAACTTTATCAAGACGCTATGCGACGAAGCTGGTTTCGCGGTGGACCAGAAGTAC 55657 Query 1686 AAGAC--GCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 ||| | || || || | ||||| ||||| | ||| | |||| |||||| Sbjct 55656 AAGTCTTGCGGC--TTGTCGCGTACGACTGTGCTTGTCACCAGCAACCACACCAT 55604 >seq98 Length=155855 Score = 89.7 bits (98), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 960 GGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATC--GTCCTTACCAAA 1017 ||||| || | |||| |||||| || || || || |||| | | |||| ||||| Sbjct 5416 GGAAAATTTCGATACGTCCTCGTTGGAGGCGTTGAAGTCGGA-ACCAAGTCCA-ACCAAG 5473 Query 1018 CGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAGA 1077 ||||| | ||| | ||||| ||| || || || ||||| ||||| ||| | ||| Sbjct 5474 ACGACTATCAGATCGAACACGTCCACTGCGCGCTCGTCTACAACAACCGGGTCACCAAGT 5533 Query 1078 ACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTA 1137 ||| | || ||||| || |||||||||||| |||||||| || ||||||||||| | Sbjct 5534 CGTCCATCCTCAAGAACCTCGGAATCAAGCAAGGTAATGGCTACTATCTTGTTCCACGGA 5593 Query 1138 AC 1139 || Sbjct 5594 AC 5595 Score = 80.6 bits (88), Expect = 6e-12 Identities = 186/271 (69%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 1452 CCTCACATCTGGCTT-ACTGGTACTCCTGGTTCTGGCAAGTCT-GCCATCTTGCAGGTCA 1509 |||||||||||||| || | || | ||||| || ||| | ||| ||||| | | | Sbjct 5917 CCTCACATCTGGCTGCACGGATA-TGCTGGTGAAGGTAAGACAAGCCTGCTTGC-GTTTA 5974 Query 1510 TCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA 1569 |||||||| |||||| ||||| || ||| || ||||| || ||||| | | Sbjct 5975 TCTATCCTAACGCTTACAAGAAGAACTTGAGCAATCGGTTCTTTGATCTGTACGACGACA 6034 Query 1570 AAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAG 1629 | ||||||||||||||| | | | ||| |||| ||| | || || | || Sbjct 6035 AGGTGCACACGCACATGATGTTGGAGGATCTCGACCACGAAGCAGTCGAGCGTCTCGGTA 6094 Query 1630 TCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGA 1689 || | || | ||||| | || |||||||| ||||| | || ||||| ||||||||| Sbjct 6095 TCAACTTTATCAAGACGCTTTGCGACGAAGCGGGTTTTACCGTCGACCAGAAGTACAAGT 6154 Query 1690 CGCCGCAAC-TGGCTCGTACCACTGT-CTTG 1718 | | || | || ||||||| ||||| |||| Sbjct 6155 C-CTGCGGCTTGTCTCGTACAACTGTGCTTG 6184 >seq662 Length=8515 Score = 82.4 bits (90), Expect = 2e-12 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1641 AAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 ||||||||||| || ||||| |||||| | || |||||||||||||||||||| || | Sbjct 4313 AAGACCATCTGCGATGAAGCCGGTTTCGCTGTCGACCAAAAGTACAAGACGCCACAGACG 4254 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 |||||||| || || | || | ||||| |||||| Sbjct 4253 GCTCGTACTACGGTACTAGTGACAAGCAACTACACCAT 4216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11897444885040