Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq83 131 7e-25 seq43 127 9e-24 seq89 95.1 5e-14 seq36 84.2 9e-11 >seq83 Length=171706 Score = 131 bits (144), Expect = 7e-25 Identities = 342/510 (67%), Gaps = 20/510 (4%) Strand=Plus/Minus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| ||||| | || || ||||||| ||| | ||||||||| |||| Sbjct 125766 AGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCT 125707 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 | |||||||| | | | ||| || | || | ||||||||| ||| | ||| | Sbjct 125706 GNCGCGTGAGCACNGCGCGCGGGCCTCGAGCNCGNGCGTGCATCTTGTCCATGACCATGT 125647 Query 448779 GCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCC 448837 ||||||| ||||| || ||| |||| | || || ||| |||| | ||| |||||| Sbjct 125646 GCTTGAGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCC 125588 Query 448838 GTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC 448893 || ||| ||| | | | ||| |||||| || | || | || | | | ||| Sbjct 125587 GTGATGCCCGACGTCAGG-TAGTCCTTGCCCGCGTAGTTGAAGCCGTGGCGCACGAGCTC 125529 Query 448894 ---CATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAA------AAGGCCGTGCCGTC 448944 | | |||| | | | | || ||| | || || || |||||||||| Sbjct 125528 GCGCGAGCAGTCGAGCACGTTGTCCGCGGTGCCGTACGCCTCGCCGAACGCCGTGCCGTA 125469 Query 448945 CT-GCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTG-GAGGGCCTCGAGCAACATGGCG 449002 | ||||| ||||||| || ||| | ||| | || ||||| || | || || Sbjct 125468 CGCGCGGCG-GCCGCTCAG-CACGCCGGCCTTGCCGGCGATCAGCTCGATCATCTTGCCG 125411 Query 449003 TAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCC 449062 |||||||| |||| | | |||||||||||||| | ||| || | ||||| | Sbjct 125410 ACCGTCATGCGGCTCGGGAAACCGTGCGGGTTCATGATCAGGTCCGGGCACACGCCGTCG 125351 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 ||||||| ||||||||||| ||||| | | |||| |||||||||||||||||| Sbjct 125350 TCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGG 125291 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 || |||| ||||||||| || ||||||| Sbjct 125290 CGACTGCTGAACTTGTCGCCGATCTCGGGC 125261 >seq43 Length=242114 Score = 127 bits (140), Expect = 9e-24 Identities = 179/247 (72%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 91471 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 91412 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| ||| | | ||||| | |||| Sbjct 91411 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGCCTACGGCGAGTACACGTTCGTCGGC 91355 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| |||| |||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 91354 ACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAGAAGGCCGAC 91295 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGG 222704 |||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 91294 GTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGG 91236 Query 222705 CCTCGAC 222711 ||| || Sbjct 91235 GCTCAAC 91229 Score = 86.0 bits (94), Expect = 3e-11 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 122211 TCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGG---AGGAGAACGTCACCATGACCC 122267 ||||||| ||||||||||| | | | | |||||| ||| ||| | | || | Sbjct 91422 TCAAGGTCGCCGACTTTGGGCTCTCGCGCTTCAAGGCCAAGGCCTACGGCG--AGTACAC 91365 Query 122268 G--CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAGCACGACGA 122325 | || ||||||||||| |||| |||||||||| |||| || |||||| ||||||| Sbjct 91364 GTTCGTCGGCACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGA 91305 Query 122326 GAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTC 122371 ||||| ||||||||| || | |||||| |||| || ||||| Sbjct 91304 GAAGGCCGACGTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTC 91259 >seq89 Length=165103 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 42912 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 42853 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 ||||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 42852 GGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 42796 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 42795 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 42737 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 42736 AGCGCAGC 42729 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 54135 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 54076 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 ||||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 54075 GGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 54019 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 54018 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 53960 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 53959 AGCGCAGC 53952 >seq36 Length=257115 Score = 84.2 bits (92), Expect = 9e-11 Identities = 127/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| | || || ||||| || || | Sbjct 161687 TCTCGTCACCGTCAAAGTCGGCGTTGTACGGCGAGCACACGCACTCGTTGAAGCGGAACG 161746 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 || | || ||| || | | |||||||| ||||||| ||| ||||| |||| | Sbjct 161747 TG---CGCCACGGCATGACCTTGGCGCGGTGCGCCATGATCGACATCTTGTGCAGCGACG 161803 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 ||||||| ||| || | ||||||||||| || ||| | ||| || | || |||| Sbjct 161804 GCTGGCGGTTGAAGAGCACAATGTCGCCATCCTCCATGTGGCGCTCGACAATATCACCGA 161863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084706584255216