Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1466 132 2e-25 seq1170 114 5e-20 seq1645 107 8e-18 seq673 95.1 5e-14 seq108 95.1 5e-14 >seq1466 Length=11765 Score = 132 bits (146), Expect = 2e-25 Identities = 362/540 (67%), Gaps = 26/540 (5%) Strand=Plus/Minus Query 448640 GCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGC 448699 ||||||||| ||| | || |||||||||| ||||| | || || ||||||| ||| Sbjct 1618 GCGCCGTAGCCGATGAGGCAGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGC 1559 Query 448700 AACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGC 448759 | ||||||||| |||||||||||||| | || || || | | |||| |||| Sbjct 1558 GAGCGGCCCTCGGTCGGCTGCCGCGTGAGCACCGCCCGGGGGCCGCGCGCACGCGCGTGC 1499 Query 448760 ATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCG 448818 ||||| ||| | ||| |||||||| ||||| || ||| |||| | | ||| ||| Sbjct 1498 ATCTTGTCCATGACCATGTGCTTGAGCTTCTGGTAGTAGATCGGGCCCAT-GAAGATGTA 1440 Query 448819 GCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGA 448877 |||| | ||| ||||||||| ||| ||| | | | ||| ||||| || | | Sbjct 1439 GCACAGGATCGGCTCGCCCGTGATGCCCGACGTGAGG-TAGTCCTTGCCGGCG---TAGT 1384 Query 448878 TCATGCCCCT---------CTCCTCCATGTAGTC---CATGAGCTCGGCCACGGAG-AGG 448924 | | ||| | ||| | | |||| || | |||||| | | | | Sbjct 1383 TGAAGCCGTTGCGCACGAGCTCGCGCGAGCAGTCGAGCACGTTGTCGGCCGTGCCGTACG 1324 Query 448925 TC-CGAA-AAGGCCGTGCCGTCCT-GCGGCAAGCCGCTCT-CACAGCCCGTGATGGCCTG 448980 | || || |||||||||| | ||||| |||| | ||| ||| | || || Sbjct 1323 CCTCGCCGAACGCCGTGCCGTACGCGCGGCG-GCCGTTGAGCAC-GCCGGCCTTGCCCGC 1266 Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 || | ||||| || | || || |||||||| |||| || | |||||||||||||| Sbjct 1265 GATGAGCTCGATCATCTTGCCGACCGTCATGCGGCTCGGGAAGCCGTGCGGGTTCATGAT 1206 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100 || ||| || | |||| ||||||| ||||||||||| ||||| | ||| Sbjct 1205 GAGGTCCGGGCACACGCCCTGGTCGTTGAACGGCATGTCCTCCTGGTTGCGGATGGTGCC 1146 Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGT 449160 | |||||||||||||||||||| |||| ||||||||| || ||||||| ||| || Sbjct 1145 GCACACGCCCTTCTGGCCGTGGCGACTGCTGAACTTGTCGCCGATCTCGGGCCGGCGCGT 1086 >seq1170 Length=14133 Score = 114 bits (126), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 879 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 938 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| | | | | ||||| | |||| Sbjct 939 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGTCTACGGCGAGTACACGTTCGTCGGC 995 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| | || |||||| |||| ||| ||| ||||| ||| ||||||||| Sbjct 996 ACGCCGTTCTGGGCCGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAAAAGGCCGAC 1055 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATC 222681 |||||| ||||||||| | | |||||| || || Sbjct 1056 GTCTACAGCTTCGGCATCGTGCTCTGGGAGCTCGTC 1091 >seq1645 Length=10619 Score = 107 bits (118), Expect = 8e-18 Identities = 171/242 (71%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||| ||||||||||||||||| | |||||| | |||| | | | || ||| Sbjct 1183 ATCCTCCACCGCGACCTCAAGAGCCCGAACCTGTTGGTGGACAAGAACTACAACATCAAG 1242 Query 222526 GTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG--- 222579 || ||||||||||| ||||||| | |||| | ||| |||||||| | Sbjct 1243 CTGTCCGACTTTGGGCTCGCGCGAGTGAAGG---CGCACGTGCAGACCATGACGGGCAAC 1299 Query 222580 TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGAG 222636 |||||||| | | |||| ||| |||||| | | || |||| || ||||| ||| Sbjct 1300 TGCGGCACCGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAAAAG---TACACGGAG 1356 Query 222637 AAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC 222696 ||||||||||| | ||||||||||||| | || |||||| |||| |||||| || |||| Sbjct 1357 AAGGCCGACGTGTTCTCGTTCGGCATCGTGATCTGGGAGATCATGACGGGCGAGTGTCCG 1416 Query 222697 TA 222698 || Sbjct 1417 TA 1418 >seq673 Length=21420 Score = 95.1 bits (104), Expect = 5e-14 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 349059 TCATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCT 349118 ||||||||| || ||| || ||||||||| || | |||| || || ||||||||| Sbjct 1735 TCATCTTGGACG---CGTTGATAATCTCCTTCAGACGCGGCACACCGAGCGTCACGTTCA 1679 Query 349119 TGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGA 349178 | |||||| || ||||||||||| |||| || |||| ||||||| ||||||| || Sbjct 1678 TACTCGCGACACCAGCAAAGTGGAATGTCTTCAGCGTCATCTGCGTGCCGGGCTCGGAGA 1619 Query 349179 TGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGGC 349216 || |||| | ||| | || || |||||||||| Sbjct 1618 TGGACTGCGCACCGATGGCTCCGACGGCCTCGCCGGGC 1581 >seq108 Length=49596 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| ||||||| || |||||| ||||||||| | ||||||||||| ||||| ||||| Sbjct 9407 CTCGATCAACATGCCGATGGTCATACGCGACGGGAACGCATGCGGGTTGATGATAATGTC 9348 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | || |||| ||||||| ||| | | ||| ||| | | Sbjct 9347 CGGCGACATGCCCGACTCGGTGAACGGCATGTTCTCCTG--CGGCCA-GAGGATACTCAT 9291 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 ||| |||||||| ||||| || |||||||||| || || |||| || || || Sbjct 9290 GACACCCTTCTGCCCGTGACGCGACGAGAACTTGTCGCCGATGACCGGG-TTTCGGCAGA 9232 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 9231 AGCGCAGC 9224 Score = 87.8 bits (96), Expect = 7e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| ||||||| || |||||| ||||||||| | || |||||||| ||||||||||| Sbjct 9594 CTCGATCAACATGCCGATGGTCATACGCGACGGGAACGCGTGCGGGTTGATGATGATGTC 9535 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTC 449082 |||| | ||| | | || |||| ||||||| ||| Sbjct 9534 CGGCGACATGCCCGACTCGGTGAACGGCATGTTCTC 9499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084266463236046