Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2426 309 2e-79 seq9 203 3e-47 >seq2426 Length=2661 Score = 309 bits (342), Expect = 2e-79 Identities = 920/1393 (66%), Gaps = 46/1393 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| || || || ||| || ||||||| ||||| || || | || || Sbjct 2190 GAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 2131 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || || ||||| || || || ||||| || |||| || || ||||| Sbjct 2130 GTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 2071 Query 65554 TCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 |||| |||| | | | | | ||| || || |||||| ||| | | Sbjct 2070 GCGCACGCCGTACTGCGCGACGCTCGCCTTGA-GCG---CGGCCCAGTCCCAGA--GACC 2017 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 ||||| | | ||| |||||| || || | | | || | || | || |||| Sbjct 2016 CGACGTCGGCGTG-ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAAC 1958 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGAGTGCG 65728 | | | || ||||| || | |||| || || | || | || ||| | ||| Sbjct 1957 CCTCGTAGCTGCCGTACGGGCCATGCTCCCGCGCGAGCTC-CATCGAGGCCTCCATGGCG 1899 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 |||| || | |||||||| ||| || || || || ||||| ||||||||| || Sbjct 1898 CCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAAC 1839 Query 65789 GGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 | | || ||||| |||| || | ||| || ||||| || || || || ||||| || || Sbjct 1838 G-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCG 1780 Query 65848 ATGACGCAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 || |||| ||| || |||| |||| || | |||||||| ||||| ||||| | Sbjct 1779 GTGGCGCAGGTTGCTGCG-CTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCT 1721 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGT 65965 |||| ||||| || || || | ||| ||| | || || ||| ||||| Sbjct 1720 TGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTT-GAAGTCAAAGGTC 1662 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 || | || |||| ||||||||||| || || | || ||||||||| Sbjct 1661 TT--GTCG-TCGGT------------CACAAACTTGGACAGCGCGATGGACGCGAGGTTG 1617 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 || || || | ||| || || | || ||||||| | ||| ||| || || || || Sbjct 1616 CACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAG 1557 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 || || ||||| | ||||| || || |||||| ||||| | |||||||||| |||| Sbjct 1556 CGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATG 1497 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA-GC-GCGTGCCT 66203 ||||| ||||| ||||| | || ||||| | ||| ||| ||| || || ||| || Sbjct 1496 TACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGG 1437 Query 66204 TCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 | ||| | | | ||| | || | ||| ||||| || | ||| || ||||| Sbjct 1436 --ATCGT-CTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCG 1380 Query 66263 TCACCCCATACTTCGGACAGA--CATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 || ||||| | ||| ||| | || || || || || | ||| ||| || | Sbjct 1379 TCGCCCCA--CGTCGTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGC 1322 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 | | || || || ||| || ||||| || ||||| | |||||||||||||| | Sbjct 1321 CGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCAC 1262 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || ||| ||| ||||||| || || | ||| |||||||| |||||||||| Sbjct 1261 GCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGG 1202 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 | ||||| || |||||||| || |||||||||||| | || |||||||| || ||||||| Sbjct 1201 CGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGA 1142 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 ||||||| || | ||||||||| |||| ||| || ||||| ||||| || ||| | Sbjct 1141 CGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGT 1082 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCA 66619 | |||||| |||| || | || || || || | ||| || | | || || || Sbjct 1081 TCGTGCCGCGGATGTACGA-GTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCG 1023 Query 66620 CCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 || ||| ||| |||||| || || | | || | | ||||| || || ||| Sbjct 1022 CCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAG 963 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 || |||| |||| || ||| |||| || || || || || ||| | || | Sbjct 962 TCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTG 903 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 || || || || || |||||||| ||| | | |||||||| | ||||||||||| Sbjct 902 AACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGC 843 Query 66800 ACAGCATCAATGT 66812 | || ||||||| Sbjct 842 GCGGCGTCAATGT 830 >seq9 Length=143240 Score = 203 bits (224), Expect = 3e-47 Identities = 599/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| | ||||| ||| || | | || | |||| |||||||| ||||| || Sbjct 120666 CGTTTCGTGCTCTTCCCGATCCAGGAGAACGAGGTGTGGCAGATGTACAAGAAGGCTGAG 120607 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGAGCG 61172 || ||||||||| | |||||| ||||| | || || ||| | || || |||| || Sbjct 120606 GCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTGCAC-GACCTCAAGGATTGGG-GCA 120549 Query 61173 TTTATCGAGCGGTGAACAA----CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | | ||| ||| | || || || || || || | |||||||| || || Sbjct 120548 ---ACCTCACGGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTCTTCGCGGCGA 120492 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG-GAGGTGCAAGTGT 61285 |||||||||||||| ||||| | | |||| ||| |||| |||||||| || Sbjct 120491 GCGACGGTATCGTCAACGAGAACCTCGCGATGAAC--TTCA-GCAGCGAGGTGCAGGTTC 120435 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 120434 CTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGGTGT 120375 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAAT 61404 || | ||||| ||||||||||||| ||| | | ||| | |||| | | || | Sbjct 120374 ACTCGCTGCTCATTGATACGTACATCAAGGACCAGACGG-AGAAGAACCACCTTCTCCGT 120316 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-AC 61463 ||||||||||| || || ||| || ||| ||| | ||||| |||| ||| | || Sbjct 120315 GCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGAC 120256 Query 61464 CAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 | | | || | |||| ||| || |||| | || || || | || ||||| | | Sbjct 120255 TCGCGCCGC-GCGGCTTTTGCTGAGCGCATTG-TCGCGTTCGCTGCCGTTGAGGGCATTT 120198 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| || ||||| | | ||||| ||| | ||||| ||||| || ||||| || | Sbjct 120197 TCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCC 120138 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTT 61642 | | |||| || ||| | || || || || |||||| | || ||||| || ||| Sbjct 120137 TCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCTCCACTGTGACTTCGCTTGCC 120078 Query 61643 TGC--TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGT 61700 ||| || || || ||| | | || | ||| ||||| ||| | |||||| | Sbjct 120077 TGCTGTACTCCAA-GCT-TGTCAACAAGC-TCC--CGGAGTCGCGCATCCATGAGATCAT 120023 Query 61701 TCGTGAGGCGGTAACTATCGAACAGGAATT--TC--TGACTGACGCTTTGCCCGTCTCAC 61756 ||| || || || | || || |||| || || |||| ||||| || ||| | Sbjct 120022 TCGCGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGGACT--CGCTT--CCGGTCGAGC 119967 Query 61757 TCATCGGCATGAA-TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | ||||||||||| | || | || |||| ||||| || || || ||||| || || Sbjct 119966 TGATCGGCATGAACTCGTCG-CTTATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTC 119908 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | | | ||| | ||| || || ||||| ||||| | |||||| Sbjct 119907 CTCCATGCGCTTGGTGTCGCCAAGATTTACAAGGTCTCGAACCCGTTTGACTGGATGGAC 119848 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 119847 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 119795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397513620524720