Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq12 145 3e-29 seq2159 118 4e-21 seq155 93.3 2e-13 seq375 91.5 6e-13 >seq12 Length=134298 Score = 145 bits (160), Expect = 3e-29 Identities = 346/505 (69%), Gaps = 20/505 (4%) Strand=Plus/Minus Query 448664 CGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCTGCCGC 448723 |||||||| ||||| | || || ||||||| ||| | ||||||||| ||||||||| Sbjct 51929 CGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCTGCCGC 51870 Query 448724 GTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTTGCTTG 448783 ||||| | | | ||| |||||| |||| ||||||||| ||| | ||| |||||| Sbjct 51869 GTGAGCACGGCGCGCGGGCCCCTCGCACGCGCGTGCATCTTGTCCATGACCATGTGCTTG 51810 Query 448784 AGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCCGTCTG 448842 || ||||| || ||| |||| | || || ||| |||| | ||| |||||||| Sbjct 51809 AGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCCGTGAT 51751 Query 448843 GCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC---CA 448895 || ||| | | | ||| ||||| || | || | || | | | ||| | Sbjct 51750 ACCCGACGTCAGG-TAGTCCTTGCCGGCGTAGTTGAAGCCGTGGCGCACGAGCTCGCGCG 51692 Query 448896 TGTAGTC---CATGAGCTCGGCCACGGAG-AGGTC-CGAA-AAGGCCGTGCCGTCCT-GC 448948 | |||| || | |||||| | | | | | || || |||||||||| | || Sbjct 51691 AGCAGTCGAGCACGTTGTCGGCCGTGCCGTACGCCTCGCCGAACGCCGTGCCGTACGCGC 51632 Query 448949 GGCAAGCCGCTCT-CACAGCCCGTGATGGCCTGGAGGGCCTCGAGCAACATGGCGTAGGT 449007 ||| |||||| ||| ||| | || || || | ||||| || | || || || Sbjct 51631 GGCG-GCCGCTGAGCAC-GCCTGCCTTGCCCGCGATGAGCTCGATCATCTTGCCGACCGT 51574 Query 449008 CATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCGTT 449067 |||||| |||| || | |||||||||||||||| |||||| ||||| | |||| Sbjct 51573 CATGCGGCTCGGGAAGCCGTGCGGGTTCATGATGAGGTCGGGGCAGACGCCGTCGTCGTT 51514 Query 449068 GAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGGCT 449127 ||| ||||||||||| ||||| | | |||| |||||||||||||||||||| || Sbjct 51513 GAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGGCGACT 51454 Query 449128 GCAGAACTTGTCCCCCTGCTCGGGC 449152 || ||||||||| || ||||||| Sbjct 51453 GCTGAACTTGTCGCCGATCTCGGGC 51429 >seq2159 Length=3157 Score = 118 bits (130), Expect = 4e-21 Identities = 177/246 (72%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 565 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 624 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAAC---CAACGCCACCATGACACGGTG--CGGCA 222586 ||||||||| || |||| ||||| | | | ||| | | ||||| | ||||| Sbjct 625 GACTTTGGGCTCTCGCGCTTCAAGAACAAGGTCTACGGCG--AGTACACGTTTGTCGGCA 682 Query 222587 CGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACG 222646 |||||| |||| |||| |||||| ||||| ||| ||| ||||| |||||||||||| | Sbjct 683 CGCCGTTCTGGGCGGCGCCCGAGGTCATCCGCCACGAGAGCTACGACGAGAAGGCCGATG 742 Query 222647 TCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGGC 222705 ||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 743 TCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGGG 801 Query 222706 CTCGAC 222711 ||| || Sbjct 802 CTCAAC 807 >seq155 Length=31069 Score = 93.3 bits (102), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 349059 TCATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCT 349118 ||||||||| || ||| || ||||||||| || | |||| || || ||||||||| Sbjct 21340 TCATCTTGGACG---CGTTGATAATCTCCTTCAGACGCGGCACACCGAGTGTCACGTTCA 21284 Query 349119 TGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGA 349178 | |||||| || ||||||||||| |||| ||| |||| ||||||| ||||||| || Sbjct 21283 TACTCGCGACACCAGCAAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCGGGCTCGGAGA 21224 Query 349179 TGCACTG 349185 | |||| Sbjct 21223 TCGACTG 21217 >seq375 Length=17438 Score = 91.5 bits (100), Expect = 6e-13 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 8226 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 8167 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 8166 CGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 8110 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAA 449163 ||| ||||||||||||||||| |||||||||| || |||| || || ||| Sbjct 8109 GACACCCTTCTGGCCGTGGCGCGACGAGAACTTGTCACCGATGACGGGGTTTCGGCAGAA 8050 Query 449164 GCGCAGC 449170 ||||||| Sbjct 8049 GCGCAGC 8043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084432114006954