Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq371 84.2 5e-13 seq830 80.6 6e-12 >seq371 Length=5393 Score = 84.2 bits (92), Expect = 5e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 959 AGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTG-ATCGTCCTTACCAAA 1017 |||||| || ||||| |||||||| || | || |||| | |||| ||||| Sbjct 2087 AGGAAACTTT-AATACGTTCTCGTCGGAGGTGCTGAAGTCGGAACAAAGTCCA-ACCAAG 2030 Query 1018 CGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAGA 1077 ||||||| || ||||||| ||||| || || | |||| || ||||||| | ||| Sbjct 2029 ACGACTACCAGATTGAGCACGTCCACGTCGCGCTCATCTACATTACCCGCGTCACCAAGT 1970 Query 1078 ACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTA 1137 ||| | || ||||| || ||||||||||| || || || || || |||||||| | Sbjct 1969 CCTCGATCCTCAAGAACCTCGCCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGAA 1910 Query 1138 ACCGTGATCTGCCTATCCA 1156 |||| ||| |||| |||| Sbjct 1909 ACCGAAATCCGCCT-TCCA 1892 >seq830 Length=3936 Score = 80.6 bits (88), Expect = 6e-12 Identities = 106/141 (75%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 1521 TATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA-AAGTGCACAC 1579 || ||||||||||| ||||||| || |||||||||| || || | || || ||||| Sbjct 595 TACTACAACAAGAACCTGGACACTCGCTTCTTCGACT-GTTTCAACGAAGAACATCACAC 537 Query 1580 GCACATGCTTCTTCAAGATGTCGATCACACGACG-GTT-GAAAAGTTGGGAGTCCAGTTC 1637 |||| || || ||||||||||| |||| ||| ||| || ||| | || ||||||||| Sbjct 536 GCACTGTCTGCTGCAAGATGTCGACCACA--ACGTGTTAGAGAAGCTCGGTGTCCAGTTC 479 Query 1638 CTAAAGACCATCTGTGACGAA 1658 | |||| || || || ||| Sbjct 478 TTCAAGAATATTTGCGATGAA 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11889713861740