Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq394 145 3e-29 seq14795 114 5e-20 seq34592 86.0 3e-11 seq12489 86.0 3e-11 >seq394 Length=5308 Score = 145 bits (160), Expect = 3e-29 Identities = 349/510 (68%), Gaps = 20/510 (4%) Strand=Plus/Minus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| ||||| | || || ||||||| ||| | ||||||||| |||| Sbjct 4059 AGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCT 4000 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 |||||||||| | | | ||| || ||| |||| ||||||||| ||| | ||| | Sbjct 3999 GCCGCGTGAGCACGGCGCGCGGGCCTCTCGCTCGCGCGTGCATCTTGTCCATGACCATGT 3940 Query 448779 GCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCC 448837 ||||||| ||||| || ||| |||| | || || ||| |||| | ||| |||||| Sbjct 3939 GCTTGAGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCC 3881 Query 448838 GTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC 448893 || ||| ||| | | | ||| ||||| || | || | || | | | ||| Sbjct 3880 GTGATGCCCGACGTCAGG-TAGTCCTTGCCGGCGTAGTTGAAGCCGTGGCGCACGAGCTC 3822 Query 448894 ---CATGTAGTC---CATGAGCTCGGCCACGGAG-AGGTC-CGAA-AAGGCCGTGCCGTC 448944 | | |||| || | |||||| | | | | | || || |||||||||| Sbjct 3821 GCGCGAGCAGTCGAGCACGTTGTCGGCCGTGCCGTACGCCTCGCCGAACGCCGTGCCGTA 3762 Query 448945 CT-GCGGCAAGCCGCTCT-CACAGCCCGTGATGGCCTGGAGGGCCTCGAGCAACATGGCG 449002 | ||||| |||||| ||| ||| | || || || | ||||| || | || || Sbjct 3761 CGCGCGGCG-GCCGCTGAGCAC-GCCGGCCTTGCCCGCGATGAGCTCGATCATCTTGCCG 3704 Query 449003 TAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCC 449062 |||||||| |||| || | |||||||||||||||| ||||| ||||| | Sbjct 3703 ACCGTCATGCGGCTCGGGAAGCCGTGCGGGTTCATGATGAGATCGGGGCAGACGCCGTCG 3644 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 ||||||| ||||||||||| ||||| | | |||| |||||||||||||||||| Sbjct 3643 TCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGG 3584 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 || |||| ||||||||| || ||||||| Sbjct 3583 CGACTGCTGAACTTGTCGCCGATCTCGGGC 3554 >seq14795 Length=884 Score = 114 bits (126), Expect = 5e-20 Identities = 176/246 (72%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| || ||| | | ||||| ||| Sbjct 241 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCGGAGCACCTCGTGGTCAAGGTCGCC 300 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACCATGA---CACGGTGC--GGCA 222586 ||||||||| || |||| ||||| ||| | | || ||| ||| | |||| Sbjct 301 GACTTTGGGCTCTCGCGCTTCAAG--AACAAGGTCTACGGTGAGTACACCTTCGTTGGCA 358 Query 222587 CGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACG 222646 |||||| |||| |||| |||||| ||||| ||| ||| ||||| |||||||||||||| Sbjct 359 CGCCGTTCTGGGCGGCGCCCGAGGTCATCCGCCATGAGAGCTACGACGAGAAGGCCGACG 418 Query 222647 TCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGGC 222705 ||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 419 TCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGGG 477 Query 222706 CTCGAC 222711 ||| || Sbjct 478 CTCAAC 483 >seq34592 Length=489 Score = 86.0 bits (94), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 18/223 (8%) Strand=Plus/Plus Query 122139 CGGCCATCGTGCACCGCGACATCAAGCCCTCTAACCTGCTGGTGGACGTCAACGCCGAGG 122198 || || |||||||||||||| ||||| || ||| ||||| | || || | || Sbjct 125 CGCCCGTCGTGCACCGCGACCTCAAGTCCAAGAACGTGCTGCT------CACCGACACGG 178 Query 122199 GCCAGCGCACCATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAG---GAGAACG 122255 || | ||| |||| | |||| |||||| | |||| | |||| |||| || Sbjct 179 GCGA-CGC-----CAAGCTCACCGATTTTGGCGTCGCCCGCGAGTGGGAGTGGGAGAGCG 232 Query 122256 TCACCATGAC---CCGCGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACG 122312 |||||||| | ||| ||| ||| | ||||||||||| ||| |||||| || Sbjct 233 CAACCATGACGGCCGGCGTCGGGTCGCTGCTGTGGATGGCGCCAGAGGTCATGCAGGGCG 292 Query 122313 AGAAGCACGACGAGAAGGTGGACGTCTACTCGTTTGGCATCGT 122355 || | |||||||||||| ||| ||| |||||||||| |||| Sbjct 293 AGCGGTACGACGAGAAGGCAGACATCTTCTCGTTTGGCGTCGT 335 >seq12489 Length=977 Score = 86.0 bits (94), Expect = 3e-11 Identities = 133/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 915 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 856 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | | |||| ||||||| ||| | | ||| ||| | | Sbjct 855 CGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAA-AGGATACTCAT 799 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAA 449163 ||||||||||||||||||||| |||||||||| || |||| || || ||| Sbjct 798 GACGCCCTTCTGGCCGTGGCGCGACGAGAACTTGTCGCCGATGACGGGGTTTCGGCAGAA 739 Query 449164 GCGCAGC 449170 ||| ||| Sbjct 738 GCGTAGC 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083080995834396