Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq208 300 1e-76 seq69 170 2e-37 >seq208 Length=29794 Score = 300 bits (332), Expect = 1e-76 Identities = 907/1377 (66%), Gaps = 44/1377 (3%) Strand=Plus/Plus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||| | || || || ||| || ||||||| ||||| || || | || || Sbjct 11995 GAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 12054 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || || || || || || || ||||| || |||| || || ||||| Sbjct 12055 GTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 12114 Query 65554 TCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 |||| |||| | | | | || ||| || || |||||| ||| | || Sbjct 12115 GCGCACACCGTACTGCGCGACGCTGGCCTTGA-GCG---CGGCCCAGTCCCAGA--GGCC 12168 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 ||||| | | ||| |||||| || | || | | | || | || | ||||| | Sbjct 12169 GGACGTCGGCGTG-ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGC 12227 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGAGTGCG 65728 | | | || ||||| || | |||||| || || | || | || ||| | ||| Sbjct 12228 CCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGAGGCCTCCATCGCG 12286 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 | || || | |||||||| ||| || || || || ||||| |||||||| || Sbjct 12287 CCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAAC 12346 Query 65789 GGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 | | || ||||| |||| || | ||| || ||||| || || || || ||||| || || Sbjct 12347 G-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCG 12405 Query 65848 ATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 || |||| ||| || ||| ||||| || | |||||||| ||||| ||||| | Sbjct 12406 GTGGCGCAGGTTGCTTCG-CTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCT 12464 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT 65966 || | ||||| || || || | ||| |||| | ||| || Sbjct 12465 TGTTGAGGTTGCGCGTGACGACCTTGGTGAT--GTCGTACAGCTTC------------TT 12510 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 | | ||| || || || ||||||||||| || || | || |||||||||| Sbjct 12511 GAAGTCGAA-GGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGC 12569 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || || | |||||| || | || ||||| | | ||| ||| || || || ||| Sbjct 12570 ACACCGCGACCTCGTCGGGCGACGTGTACTCAAGCACCTCGCAGCAGAGGTTGCTCGAGC 12629 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 | || ||||| | ||||| || || |||||| ||||| | |||||||| | ||||| Sbjct 12630 GGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGT 12689 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA-GC-GCGTGCCTT 66204 |||| ||||| ||||| | || ||||| | ||| ||| ||| || || ||| || Sbjct 12690 ACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGG- 12748 Query 66205 CACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | ||| | | | ||| | || | ||| ||||| || | ||| || ||||| | Sbjct 12749 -ATCGT-CTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 12806 Query 66264 CACCCCATACTTCGG--ACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||| | ||| | |||| || || || || || | ||| ||| || || Sbjct 12807 CACCCCA--CGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCC 12864 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || || || ||| || ||||| || ||||| | |||||||||||||| || Sbjct 12865 GTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACG 12924 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || ||| ||| ||||||| || || | |||||||||||| ||||||||||| Sbjct 12925 CGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGC 12984 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || |||||||| || |||||||||||| | || || |||||||| || || || Sbjct 12985 GTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCAC 13044 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || || || | |||||| || |||| ||| || ||||| ||||| || ||| || Sbjct 13045 ATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTT 13104 Query 66562 GGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||||| |||| || | || || || || | ||| ||| | | ||| || || | Sbjct 13105 CGTGCCGCGGATGTACGA-GTTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGC 13163 Query 66621 CGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGT 66680 ||||| ||| |||||| ||| || | | || | ||||| || || |||| Sbjct 13164 CGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGT 13223 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 | |||| |||| || ||| |||| || || || || || ||| |||| || Sbjct 13224 CGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGA 13283 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 | || || || || |||||||| ||| | | |||||||| | ||||||||||| Sbjct 13284 ACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGA 13340 >seq69 Length=49210 Score = 170 bits (188), Expect = 2e-37 Identities = 582/889 (65%), Gaps = 31/889 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATC---GAGTATGAGGATATTTGGCGCATGTACAAAAAGGCG 61110 |||||||| | ||||| ||| ||| |||||| | |||| |||||||| ||||| Sbjct 9072 CGTTTCGTGCTCTTCCCGATCCAGGAGAATGAGG---TCTGGCAGATGTACAAGAAGGCC 9016 Query 61111 GAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGA 61169 || || ||||||||||| || ||| |||| | ||||| ||| | || |||||| | Sbjct 9015 GAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTCCAC-GACCTCAAGGACTGGAA 8957 Query 61170 GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTC 61229 | || | || | | ||||| || || ||| | |||||||| || || Sbjct 8956 CAACCTCACGGACAACGAGCGCTACTTCATCAAGCACGTGCTCGCGTTCTTCGCGGCCAG 8897 Query 61230 GGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG-GAGGTGCAAGTGTC 61286 || || |||||||| ||||| | | |||| ||| |||| |||||||| || | Sbjct 8896 TGATGGCATCGTCAACGAGAACCTCGCGATGAAC--TTCA-GCAGCGAGGTGCAGGTTCC 8840 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||||||||| ||||| |||||||||||||| || ||||| ||||||||||| |||| Sbjct 8839 TGAGGCGCGTTGCTTCTATGGCTTCCAGATTGCGATTGAGAACATCCACTCGGAGGTGTA 8780 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAATG 61405 | | |||||||| |||||||||| ||| | | | | | |||| | | || | Sbjct 8779 CTCGCTGCTCATCGACACGTACATCAAGGACCAGACCG-AGAAGAACCACCTTCTCCGCG 8721 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACC 61464 ||||||||||||| || ||| || ||| ||| | ||||| | || ||| | || Sbjct 8720 CCATCGAGACGATCCCCTGCGTGCAGAAGAAGGCGCACTGGGCGCTTAAGTGGTGCGACT 8661 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | | || | || | || || | | || || || | || ||||| | || Sbjct 8660 CGCGCCGC-GCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTTGAGGGCATCTTC 8602 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||| || ||||| | | ||||| ||| | ||||| || || || ||||| || || Sbjct 8601 TTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTC 8542 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 | |||| || ||| |||| || || |||||||| | || || || || || || Sbjct 8541 AGCTTCTCGAACGAGCTGATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTG 8482 Query 61645 C--TATTCAAA---CGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | || || || ||| | | || | ||| | ||| || | ||||| Sbjct 8481 CTGTACTCGAAGCTCGCCAAC-----AAGC-TCC--CTGAGTCTCGCATCCACGAGATCA 8430 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 |||| || || || | ||||| |||| ||| | ||| | | || || |||| Sbjct 8429 TTCGCGATGCCGTTGCGATCGAGAAGGAGTTTGTCCAGGACTCGCTCCCGGTGGAGCTCA 8370 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||| ||||| | || |||| ||||| ||||| || ||||| || || | Sbjct 8369 TCGGTATGAACTCGTCCCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCC 8310 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 || | ||| | |||||| || | ||||| || || | |||||||||| Sbjct 8309 ACGCGCTTGGTGTTGCCAAGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATGA 8250 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 8249 TCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 8201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397504719598400