Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq4439 242 9e-61 seq10971 123 6e-25 seq2230 95.1 3e-16 >seq4439 Length=1330 Score = 242 bits (268), Expect = 9e-61 Identities = 701/1067 (66%), Gaps = 14/1067 (1%) Strand=Plus/Minus Query 873 GACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAAGATCTCGAGGCTCTCCTT 932 |||||| | ||||| || |||||||| || || ||||| || ||||||||| |||||| Sbjct 1174 GACCGTGAATGGGATGCGCGCTTCAACGTGCCAACCGAAGAGGATCTCGAGCTACTCCTT 1115 Query 933 CTCAATGTCAAGAGCGAAGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTA 992 || || |||| || ||| | ||| |||| | | ||| || ||| ||| | Sbjct 1114 CTGTGCGTGAAGAAGGAGTATGAGCGAGGCAAGTACAAGTACGTGCTGGTCTCTGGCATC 1055 Query 993 GAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTCTG 1052 || |||| | || | || |||||| | || ||||||||| | | Sbjct 1054 GAAGTCGGCACCCAGCCATTCCGCGACGACTACTTGATGCGCCACGTGCACTGCTGTTTT 995 Query 1053 GTGTACAATAACCGCGTCTCGAAGAACTCCGTGCTGAAGAATCTTCAA-ATCAAGCAAGG 1111 |||||||| ||||| || |||| | | ||||||| ||| || || ||||| || Sbjct 994 GTGTACAACAACCGTGTGAGCAAGAGTGCTATCTTGAAGAA-CTTGAAGATTAAGCAGGG 936 Query 1112 CAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGATCA 1171 ||| || ||||| || || ||||| || || |||| | |||| ||| || || Sbjct 935 CAACGGGTATTATCTCGTGCCACGCAATCGAACGTTGCCGTACAAAGGATGGCGTGACCA 876 Query 1172 TCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCT---GTATGAGTACGGCAC 1228 ||| | ||| | | |||||| || ||| || ||| | ||||||| | ||| Sbjct 875 CCACGCAAAGA-AGACACGAAAGTCGACGCCAACGAGAAGATCTTGTATGAGAATGGCGT 817 Query 1229 TCTACCTGCTGACAAACCCAATATCTCT-GCTCAAGTGACCAAGAGATCGCCAGAGGAAA 1287 || || || || | || || |||||||| ||| | | || | || |||| Sbjct 816 GCTCCCGCAAGATAAGGCTG-TAGCTGAAGCTCAAGTCACCTTGCGGTCCGCTGAAGAAA 758 Query 1288 AGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGGACGCG 1347 ||||| ||||||| || ||| |||||| | ||||||||||||||||||| |||||| | Sbjct 757 AGAAGCGAAAACTAGATGATATCATCATGAAGATGCGAGGCATGATCGAGGAAGGAAAAG 698 Query 1348 AAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTGAAAG 1407 | || || || |||| || || ||||| || ||| ||| ||||| |||||| | || Sbjct 697 ACGAAGAGGCGTTCAAGAAATTCCCTCGGAATTACCTGATGTATGGTGAAAAGATCAAGT 638 Query 1408 CTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCTTA 1467 || | | || || |||| |||||| ||||| ||||| | | |||||| Sbjct 637 CTCTCGTTGTGCAAAAACGAAACTTGTTCAAGGCTAACGGAGACCCCTATGTTTGGCTTT 578 Query 1468 CTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACA 1527 ||| ||||||| | || || || || | || |||||||| || | ||||||| Sbjct 577 GGGGTCTTCCTGGTACGGGTAAATCCGCACTGATGGGCGTCATCTACCCGGACTATTACA 518 Query 1528 ACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGC 1587 ||||||| ||||||| ||| |||||||||| || | || ||||||||| | Sbjct 517 ACAAGAACCTGGACACCCGATTCTTCGACTGCTATAACGAGGAACATCACACGCACTGCC 458 Query 1588 TTCTTCAAGATGTCGATCACACGACG--GTTGAAAAGTTGGGAGTCCAGTTCCTAAAGAC 1645 | | || || || || || | ||| | || ||| | || ||||||||| | ||| | Sbjct 457 TGATGCAGGACGTGGACCAAA--ACGTTATGGAGAAGCTCGGTGTCCAGTTCTTCAAGTC 400 Query 1646 CATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCG 1705 | || || || | || | ||| | || || | ||| | | | ||| || Sbjct 399 TGTATGCGATGAGTCGGGGTACCCGATCGATGTGAAATTTAAGGCTGCCAAGATGGTCCG 340 Query 1706 TACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCC 1765 || || || | ||| || ||||||| |||| | || ||| | ||||||||| |||| Sbjct 339 TATGACCATCCTTGTCACTAGCAACTTCTGCATCGATGACGTGGTGCCGGAAGACTTGCC 280 Query 1766 AGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGT 1825 || || ||| ||| | | ||||| || ||||||| |||| ||| |||||| Sbjct 279 TGGTCGTCGTGAGAATTTGGCTGCTCTTTCACGACGCTTCTTCCAAGTCAACATTCGTGA 220 Query 1826 TCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAA-AC 1884 |||| ||| || || || || ||| | | ||||| || |||||| ||||| | Sbjct 219 TCTTCTGCCCATTCTGGGCCTTAAGATGATCAACAAGTATGAGCTGAACTTGTTGAAGAA 160 Query 1885 GCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTAC 1931 | |||| || | ||||| ||| ||||| ||| ||||| ||| Sbjct 159 GAGTGGCAACAC-GGATCCGCGCAAGCTCTTTATGAGTTGGGACTAC 114 >seq10971 Length=388 Score = 123 bits (136), Expect = 6e-25 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 1452 CCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATC 1511 || ||| | ||| | | ||| ||| ||| | ||||| | ||||||||| || || | Sbjct 53 CCGCACCTGTGGGTGATGGGTTATCCGGGTACAGGCAAAACCGCCATCTTGAAGTTCTTG 112 Query 1512 TATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAA 1571 ||||| | ||||| |||||||| |||||| | ||| || | || | || || Sbjct 113 TATCCGAAATTGTACAAGAAGAATCTCTTCAACCGATACTTTGATCTATATGATCCGAAG 172 Query 1572 GTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTC 1631 | ||||| ||| || | ||| |||| | || ||| | || ||||||||| | || Sbjct 173 GAACACACCCACGTGATGCTTGAAGACCTAGACCACGAAGCCGTCGAAAAGTTGAGCATC 232 Query 1632 CAGTTCCTAAAGACCATCTGTGACGAAG-CTGGTTTCCCAGTTGACCAAAAGTACAAGAC 1690 | || |||||||||||||||| |||| | ||||||||| |||| |||||||||||| | Sbjct 233 AACTTTATAAAGACCATCTGTGATGAAGCCGGGTTTCCCA-TTGATCAAAAGTACAAGTC 291 Query 1691 GCCGCAACTGGC 1702 |||||||| || Sbjct 292 ACCGCAACTTGC 303 >seq2230 Length=3299 Score = 95.1 bits (104), Expect = 3e-16 Identities = 145/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| ||||| || |||||||||||||||| | ||| | || ||||| ||||| Sbjct 2397 TACAAGAAGAACCTAAGCAACCGTTTCTTCGACCTCTACGATGACAAGGTGCATACGCAT 2338 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACG-GTTGAAAAGT-TGGGAGTCCAGTTCCTAA 1641 |||||||| |||| |||| ||||| | | || | || | ||| || | ||| | | Sbjct 2337 ATGCTTCTGGAAGACCTCGA--CCACGAAGCGATGGAGCGTCTTGGAATCAACTTCATCA 2280 Query 1642 AGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAAC-TG 1700 | || | || ||||||||||||||| | || ||||| ||||||||| | | || | || Sbjct 2279 AAACTTTATGCGACGAAGCTGGTTTCGCGGTGGACCAGAAGTACAAGTC-CTGCGGCTTG 2221 Query 1701 GCTCGTACCACTGT-CTTG 1718 | ||||| ||||| |||| Sbjct 2220 TCGCGTACGACTGTGCTTG 2202 Score = 95.1 bits (104), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 959 AGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATC--GTCCTTACCAA 1016 ||||||||| | |||| || ||||| || || |||||||| | | |||| ||||| Sbjct 2971 AGGAAAGTTTCGATACGTTCTTGTCGGAGGTGTTGAGATCGGC-ACCAAGTCCA-ACCAA 2914 Query 1017 ACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAG 1076 ||||||| ||| ||||||||||| || || || || || ||||||||| | ||| Sbjct 2913 GACGACTACCAAATCGAGCACGTGCACTGTGCCCTCGTCTATAACAACCGCGTCACCAAG 2854 Query 1077 AACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGT 1136 | | || ||||| || ||||||||||| || || || || || |||||||| Sbjct 2853 TCGAGCATCCTCAAGAACCTCGGCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGG 2794 Query 1137 AACCGTGATCTGCCT 1151 ||||| ||||||| Sbjct 2793 AACCGAAGTCTGCCT 2779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11895900502200