Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq4532 127 9e-24 seq1204 107 8e-18 seq1000 98.7 4e-15 seq866 89.7 2e-12 >seq4532 Length=1287 Score = 127 bits (140), Expect = 9e-24 Identities = 179/247 (72%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 736 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 677 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| ||| | | ||||| | |||| Sbjct 676 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGCCTACGGCGAGTACACGTTCGTCGGC 620 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| |||| |||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 619 ACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAGAAGGCCGAC 560 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGG 222704 |||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 559 GTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGG 501 Query 222705 CCTCGAC 222711 ||| || Sbjct 500 GCTCAAC 494 Score = 86.0 bits (94), Expect = 3e-11 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 122211 TCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGG---AGGAGAACGTCACCATGACCC 122267 ||||||| ||||||||||| | | | | |||||| ||| ||| | | || | Sbjct 687 TCAAGGTCGCCGACTTTGGGCTCTCGCGCTTCAAGGCCAAGGCCTACGGCG--AGTACAC 630 Query 122268 G--CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAGCACGACGA 122325 | || ||||||||||| |||| |||||||||| |||| || |||||| ||||||| Sbjct 629 GTTCGTCGGCACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGA 570 Query 122326 GAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTC 122371 ||||| ||||||||| || | |||||| |||| || ||||| Sbjct 569 GAAGGCCGACGTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTC 524 >seq1204 Length=6909 Score = 107 bits (118), Expect = 8e-18 Identities = 322/482 (67%), Gaps = 24/482 (5%) Strand=Plus/Minus Query 448689 CGCCGTGTCGCAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCT 448748 |||||| ||| | ||||||||| |||||||||||||| | | | ||| || || Sbjct 3325 CGCCGTCGCGCGAGCGGCCCTCGGTCGGCTGCCGCGTGAGCACAGCGCGCGGGCC--TCG 3268 Query 448749 GCCGCGTG--TGCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAA-GGGCG 448805 | |||| | |||||||| ||| | ||| |||||||| ||||| || ||| |||| Sbjct 3267 GGCGCGGGCGTGCATCTTGTCCATGACCATGTGCTTGAGCTTCTGGTAGTAGATCGGGCC 3208 Query 448806 CGTAGAACATGCGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTG 448864 | || || ||| |||| | ||| |||||||| ||| ||| | | | ||| ||| Sbjct 3207 CATA-AAGATGTAGCACAGGATCGGTTCGCCCGTGATGCCCGACGTCAGG-TAGTCCTTG 3150 Query 448865 CCCTCGGGCTCGAT--CATGCCCCTCTC-CTC---CATGTAGTCCATGAGCTCGGCCACG 448918 ||| || | || | || | | | ||| | | |||| | | | | || || Sbjct 3149 CCCGCGTAGTTGAAGCCGTGGCGCACGAGCTCGCGCGAGCAGTCGAGCACGTTGTCCGCG 3090 Query 448919 GAGAGGTCCGAA------AAGGCCGTGCCGTCCT-GCGGCAAGCCGCTCTCACAGCCCGT 448971 | | || || || |||||||||| | ||||| ||||||| || ||| Sbjct 3089 GTGCCGTACGCCTCGCCGAACGCCGTGCCGTACGCGCGGCG-GCCGCTCAG-CACGCCGG 3032 Query 448972 GATGGCCTG-GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCG 449030 | ||| | || ||||| || | || || |||||||| |||| | | |||| Sbjct 3031 CCTTGCCGGCGATCAGCTCGATCATCTTGCCGACCGTCATGCGGCTCGGGAAACCGTGCG 2972 Query 449031 GGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGA 449090 |||||||||| | ||| || | ||||| | ||||||| ||||||||||| ||||| Sbjct 2971 GGTTCATGATCAGGTCCGGGCACACGCCGTCGTCGTTGAACGGCATGTCCTCCTGGTTGC 2912 Query 449091 CCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGG 449150 | | |||| |||||||||||||||||||| || | ||||||||| || ||||| Sbjct 2911 GGATCGTGCCGCACACGCCCTTCTGGCCGTGGCGACTACTGAACTTGTCGCCGATCTCGG 2852 Query 449151 GC 449152 || Sbjct 2851 GC 2850 >seq1000 Length=8332 Score = 98.7 bits (108), Expect = 4e-15 Identities = 138/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| ||||||| || ||||| ||||||||| | ||||||||||| ||||| ||||| Sbjct 1176 CTCGATCAACATGCCGATCGTCATACGCGACGGGAACGCATGCGGGTTGATGATAATGTC 1235 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | | |||| ||||||| ||| | | ||| |||| | | Sbjct 1236 CGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTG--CGGCCA-CAGGATACTCAT 1292 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 1293 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 1351 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 1352 AGCGCAGC 1359 >seq866 Length=9570 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| | || || ||||| || || | Sbjct 6015 TCTCGTCACCGTCAAAGTCGGCGTTGTACGGCGAGCACACGCACTCGTTGAAGCGGAACG 5956 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 || | || ||| || | | |||||||| ||||||| ||| ||||| |||| | Sbjct 5955 TG---CGCCACGGCATGACCTTGGCGCGGTGCGCCATGATCGACATCTTGTGCAGCGACG 5899 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 ||||||| ||| || | ||||||||||| || ||| | ||| || |||| |||| Sbjct 5898 GCTGGCGGTTGAAGAGCACAATGTCGCCATCCTCCATGTGGCGCTCGACAATGTCACCGA 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084381849641880