Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq4863 91.5 4e-15 seq5335 89.7 1e-14 seq2454 82.4 2e-12 >seq4863 Length=2135 Score = 91.5 bits (100), Expect = 4e-15 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 1509 ATCTATCC---TGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAG 1565 |||||||| |||||| ||| ||||| || ||||||||| |||||| | ||| | Sbjct 1866 ATCTATCCGAATGCGTA---CAAGAAGAACCTAAGCAACCGTTTTTTCGACCTCTACGAT 1810 Query 1566 CCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTG 1625 || ||||| ||||| |||||||| |||| |||| ||| | | ||| | Sbjct 1809 GACAAGGTGCATACGCATATGCTTCTGGAAGACCTCGACCACGAAGCCATGGAACGCCTT 1750 Query 1626 GGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTAC 1685 ||| || | || | ||||| | || ||||||||||||||| | || ||||| |||||| Sbjct 1749 GGAATCAACTTTATCAAGACTCTATGCGACGAAGCTGGTTTCGCGGTGGACCAGAAGTAC 1690 Query 1686 AAGACGCCGCAAC-TGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 ||| || || | || | ||||| ||||| | ||| | |||| |||||| Sbjct 1689 AAGTCG-TGCGGCTTGTCGCGTACGACTGTGCTTGTCACCAGCAACCACACCAT 1637 >seq5335 Length=1935 Score = 89.7 bits (98), Expect = 1e-14 Identities = 192/277 (69%), Gaps = 19/277 (7%) Strand=Plus/Minus Query 1452 CCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTC--- 1508 |||||||||||||| |||| |||| || ||| | || ||||| | | Sbjct 983 CCTCACATCTGGCTGCATGGTTACGCTGGAGAAGGTAAGAC---CAGCTTGCTCGCCTTT 927 Query 1509 ATCTATCC---TGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAG 1565 |||||||| |||||| ||| ||||| || ||||||||| |||||| | ||| | Sbjct 926 ATCTATCCGAATGCGTA---CAAGAAGAACCTAAGCAACCGTTTTTTCGACCTCTACGAT 870 Query 1566 CCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGT-TGAAAAGT- 1623 || ||||| ||||| |||||||| |||| |||| ||| || | | || | || Sbjct 869 GACAAGGTGCATACGCATATGCTTCTGGAAGACCTCGACCAC--GAAGCTATGGAGCGTC 812 Query 1624 TGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGT 1683 | || || | || | ||||| | || ||||||||||| ||| |||| ||||| |||| Sbjct 811 TTGGCATCAACTTTATCAAGACTTTATGCGACGAAGCTGGGTTCGCAGTCGACCAGAAGT 752 Query 1684 ACAAGACGCCGCAAC-TGGCTCGTACCACTGT-CTTG 1718 ||||| || || | || | ||||| ||||| |||| Sbjct 751 ACAAGTCG-TGCGGCTTGTCGCGTACGACTGTGCTTG 716 >seq2454 Length=3891 Score = 82.4 bits (90), Expect = 2e-12 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1641 AAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 |||||||||||||| |||||||||||| | || || ||||| ||||||||||| || | Sbjct 2208 AAGACCATCTGTGATGAAGCTGGTTTCGCCGTCGATCAAAAATACAAGACGCCACAGACG 2149 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 |||||||| || || | ||| | ||||| ||| || Sbjct 2148 GCTCGTACTACAGTACTAGTCACAAGCAACTACACGAT 2111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11894664267200