Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq17830 127 9e-24 seq4313 111 7e-19 seq24 95.1 5e-14 seq93 93.3 2e-13 >seq17830 Length=407 Score = 127 bits (140), Expect = 9e-24 Identities = 179/247 (72%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 320 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 261 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| ||| | | ||||| | |||| Sbjct 260 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGCCTACGGCGAGTACACGTTCGTCGGC 204 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| |||| |||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 203 ACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAGAAGGCCGAC 144 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGG 222704 |||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 143 GTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGG 85 Query 222705 CCTCGAC 222711 ||| || Sbjct 84 GCTCAAC 78 Score = 86.0 bits (94), Expect = 3e-11 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 122211 TCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGG---AGGAGAACGTCACCATGACCC 122267 ||||||| ||||||||||| | | | | |||||| ||| ||| | | || | Sbjct 271 TCAAGGTCGCCGACTTTGGGCTCTCGCGCTTCAAGGCCAAGGCCTACGGCG--AGTACAC 214 Query 122268 G--CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAGCACGACGA 122325 | || ||||||||||| |||| |||||||||| |||| || |||||| ||||||| Sbjct 213 GTTCGTCGGCACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGA 154 Query 122326 GAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTC 122371 ||||| ||||||||| || | |||||| |||| || ||||| Sbjct 153 GAAGGCCGACGTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTC 108 >seq4313 Length=2415 Score = 111 bits (122), Expect = 7e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || | || || |||||||| |||| | | |||||||||||||| | ||| Sbjct 1749 CTCGATCATCTTGCCGACCGTCATGCGGCTCGGGAAACCGTGCGGGTTCATGATCAGGTC 1690 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 || | ||||| | ||||||| ||||||||||| ||||| | | |||| || Sbjct 1689 CGGGCACACGCCGTCGTCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACAC 1630 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 |||||||||||||||||| |||| ||||||||| || ||||||| Sbjct 1629 GCCCTTCTGGCCGTGGCGACTGCTGAACTTGTCGCCGATCTCGGGC 1584 >seq24 Length=21228 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 6169 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 6228 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 ||||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 6229 GGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 6285 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 6286 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 6344 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 6345 AGCGCAGC 6352 >seq93 Length=15409 Score = 93.3 bits (102), Expect = 2e-13 Identities = 129/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| | || || ||||| || || | Sbjct 10495 TCTCGTCACCGTCAAAGTCGGCGTTGTACGGCGAGCACACGCACTCGTTGAAGCGGAACG 10554 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 || | || ||| || | | |||||||| ||||||| ||| ||||| |||| | Sbjct 10555 TG---CGCCACGGCATGACCTTGGCGCGGTGCGCCATGATCGACATCTTGTGCAGCGACG 10611 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 ||||||| ||| || | |||||||||||| || ||| | ||| || |||| |||| Sbjct 10612 GCTGGCGGTTGAAGAGCACGATGTCGCCATCCTCCATGTGGCGCTCGACAATGTCACCGA 10671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084121908722880