Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq8370 109 1e-20 seq3180 93.3 1e-15 seq5288 89.7 1e-14 seq3301 89.7 1e-14 >seq8370 Length=682 Score = 109 bits (120), Expect = 1e-20 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| |||||||| |||||| | ||| || | || | || || | ||| || || Sbjct 667 TACAAGAAGAATCTCTTCAACCGATACTTTGATCTATATGATCCGAAGGAGCATACCCAT 608 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAG 1643 || | ||| |||| | || ||| | || ||||| ||| | || | || | ||| Sbjct 607 GTGATGCTTGAAGACCTAGACCACGAAGCCGTCGAAAAATTGAGCATCAACTTTATCAAG 548 Query 1644 ACCATCTGTGACGAAGCTGG-TTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGC 1702 ||||||||||| ||||| || ||||||| ||||||||||||||||| | |||||||| || Sbjct 547 ACCATCTGTGATGAAGCCGGGTTTCCCA-TTGACCAAAAGTACAAGTCACCGCAACTCGC 489 Query 1703 TCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATC 1739 || ||||| ||||| ||| ||||| ||||| Sbjct 488 CAAGACGACTGTGTTGGTAAGTTCTAACTTTTCCATC 452 >seq3180 Length=2951 Score = 93.3 bits (102), Expect = 1e-15 Identities = 201/292 (69%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 1452 CCTCACATCTGGCTT-ACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCAT 1510 || ||| | ||| || || |||| ||| || | ||||| | || || || | ||| Sbjct 2565 CCACACCTGTGGGTTCACGGGTA-TCCAGGCACGGGCAAAACCGCAATTCTGAACTACAT 2507 Query 1511 CTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAA 1570 |||||| | | ||| || || || ||||| |||||||| | || | || | Sbjct 2506 CTATCCGAAGGCGTTCAAGAAAAACCTCTACAACAAGTTCTTCGATCTTTATGATCCTAC 2447 Query 1571 AGTGCACACGCACATGCTTCTTCAAGATGTCGATCAC-ACGACGGTTGAAAAGT-TGGGA 1628 | ||||||||||| | ||| ||||| | |||||| | | || || || || | | Sbjct 2446 TGACCACACGCACATCATCCTTGAAGATCTGGATCACGAAGCCG--TGCAACGTCTCAGT 2389 Query 1629 GTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAG 1688 || | || | ||||||||||| || ||||| || ||| | || || || |||||||| Sbjct 2388 ATCAACTTTATCAAGACCATCTGCGATGAAGCCGGGTTCGCCGTGGATCAGAAGTACAAA 2329 Query 1689 ACGCCGCAACTGGCTCGTACCA-CTGTCTTGGTCTCTTCCAACTTCACCATC 1739 || || || |||||||||||| |||| |||||| |||| || || || ||| Sbjct 2328 ACTCCACAGTTGGCTCGTACCACCTGT-TTGGTCACTTCTAATTTTACGATC 2278 >seq5288 Length=1450 Score = 89.7 bits (98), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 960 GGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATC--GTCCTTACCAAA 1017 ||||| || | |||| |||||| || || || || |||| | | |||| ||||| Sbjct 1373 GGAAAATTTCGATACGTCCTCGTTGGAGGCGTTGAAGTCGGA-ACCAAGTCCA-ACCAAG 1316 Query 1018 CGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAGA 1077 ||||| | ||| | ||||| ||| || || || ||||| ||||| ||| | ||| Sbjct 1315 ACGACTATCAGATCGAACACGTCCACTGCGCGCTCGTCTACAACAACCGGGTCACCAAGT 1256 Query 1078 ACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTA 1137 ||| | || ||||| || |||||||||||| |||||||| || ||||||||||| | Sbjct 1255 CGTCCATCCTCAAGAACCTCGGAATCAAGCAAGGTAATGGCTACTATCTTGTTCCACGGA 1196 Query 1138 AC 1139 || Sbjct 1195 AC 1194 Score = 80.6 bits (88), Expect = 6e-12 Identities = 186/271 (69%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 1452 CCTCACATCTGGCTT-ACTGGTACTCCTGGTTCTGGCAAGTCT-GCCATCTTGCAGGTCA 1509 |||||||||||||| || | || | ||||| || ||| | ||| ||||| | | | Sbjct 872 CCTCACATCTGGCTGCACGGATA-TGCTGGTGAAGGTAAGACAAGCCTGCTTGC-GTTTA 815 Query 1510 TCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA 1569 |||||||| |||||| ||||| || ||| || ||||| || ||||| | | Sbjct 814 TCTATCCTAACGCTTACAAGAAGAACTTGAGCAATCGGTTCTTTGATCTGTACGACGACA 755 Query 1570 AAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAG 1629 | ||||||||||||||| | | | ||| |||| ||| | || || | || Sbjct 754 AGGTGCACACGCACATGATGTTGGAGGATCTCGACCACGAAGCAGTCGAGCGTCTCGGTA 695 Query 1630 TCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGA 1689 || | || | ||||| | || |||||||| ||||| | || ||||| ||||||||| Sbjct 694 TCAACTTTATCAAGACGCTTTGCGACGAAGCGGGTTTTACCGTCGACCAGAAGTACAAGT 635 Query 1690 CGCCGCAAC-TGGCTCGTACCACTGT-CTTG 1718 | | || | || ||||||| ||||| |||| Sbjct 634 C-CTGCGGCTTGTCTCGTACAACTGTGCTTG 605 >seq3301 Length=2826 Score = 89.7 bits (98), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| ||||| || ||||||||| |||||| | ||| | || ||||| ||||| Sbjct 2364 TACAAGAAGAACCTAAGCAACCGTTTTTTCGACCTCTACGATGACAAGGTGCATACGCAT 2305 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAG 1643 |||||||| |||| |||| ||| || | ||| | ||| || | || | ||| Sbjct 2304 ATGCTTCTGGAAGACCTCGACCACGAAGCGATCGAACGCCTTGGAATCAATTTTATCAAG 2245 Query 1644 ACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGAC--GCCGCAACTGG 1701 || | || |||||||||||||| | || ||||| ||||||||| | || || || Sbjct 2244 ACGCTATGCGACGAAGCTGGTTTGGCGGTGGACCAGAAGTACAAGTCTTGCGGC--TTGT 2187 Query 1702 CTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 | ||||| ||||| | ||| | |||| |||||| Sbjct 2186 CGCGTACGACTGTGCTTGTCACGAGCAACCACACCAT 2150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11895703225120