Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq9382 127 9e-24 seq2106 127 9e-24 seq2164 95.1 5e-14 seq811 89.7 2e-12 seq3651 86.0 3e-11 >seq9382 Length=569 Score = 127 bits (140), Expect = 9e-24 Identities = 179/247 (72%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 320 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 261 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| ||| | | ||||| | |||| Sbjct 260 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGCCTACGGCGAGTACACGTTCGTCGGC 204 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| |||| |||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 203 ACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAGAAGGCCGAC 144 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGG 222704 |||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 143 GTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGG 85 Query 222705 CCTCGAC 222711 ||| || Sbjct 84 GCTCAAC 78 Score = 86.0 bits (94), Expect = 3e-11 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 122211 TCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGG---AGGAGAACGTCACCATGACCC 122267 ||||||| ||||||||||| | | | | |||||| ||| ||| | | || | Sbjct 271 TCAAGGTCGCCGACTTTGGGCTCTCGCGCTTCAAGGCCAAGGCCTACGGCG--AGTACAC 214 Query 122268 G--CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAGCACGACGA 122325 | || ||||||||||| |||| |||||||||| |||| || |||||| ||||||| Sbjct 213 GTTCGTCGGCACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGA 154 Query 122326 GAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTC 122371 ||||| ||||||||| || | |||||| |||| || ||||| Sbjct 153 GAAGGCCGACGTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTC 108 >seq2106 Length=4523 Score = 127 bits (140), Expect = 9e-24 Identities = 342/510 (67%), Gaps = 20/510 (4%) Strand=Plus/Minus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| ||||| | || || ||||||| ||| | ||||||||| |||| Sbjct 3856 AGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCT 3797 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 | |||||||| | | | ||| || | || | ||||||||| ||| | ||| | Sbjct 3796 GTCGCGTGAGCACGGCGCGCGGGCCTCGAGCACGAGCGTGCATCTTGTCCATGACCATGT 3737 Query 448779 GCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCC 448837 ||||||| ||||| || ||| |||| | || || ||| |||| | ||| |||||| Sbjct 3736 GCTTGAGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCC 3678 Query 448838 GTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC 448893 || ||| ||| | | | ||| |||||| || | || | || | | | ||| Sbjct 3677 GTGATGCCCGACGTCAGG-TAGTCCTTGCCCGCGTAGTTGAAGCCGTGGCGCACGAGCTC 3619 Query 448894 ---CATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAA------AAGGCCGTGCCGTC 448944 | | |||| | | | | || ||| | || || || |||||||||| Sbjct 3618 GCGCGAGCAGTCGAGCACGTTGTCCGCGGTGCCGTACGCCTCGCCGAACGCCGTGCCGTA 3559 Query 448945 CT-GCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTG-GAGGGCCTCGAGCAACATGGCG 449002 | ||||| ||||||| || ||| | ||| | || ||||| || | || || Sbjct 3558 CGCGCGGCG-GCCGCTCAG-CACGCCGGCCTTGCCGGCGATCAGCTCGATCATCTTGCCG 3501 Query 449003 TAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCC 449062 |||||||| |||| | | |||||||||||||| | ||| || | ||||| | Sbjct 3500 ACCGTCATGCGGCTCGGGAAACCGTGCGGGTTCATGATCAGGTCCGGGCACACGCCGTCG 3441 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 ||||||| ||||||||||| ||||| | | |||| |||||||||||||||||| Sbjct 3440 TCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGG 3381 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 || |||| ||||||||| || ||||||| Sbjct 3380 CGACTGCTGAACTTGTCGCCGATCTCGGGC 3351 >seq2164 Length=4410 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 3670 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 3611 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 ||||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 3610 GGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 3554 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 3553 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 3495 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 3494 AGCGCAGC 3487 >seq811 Length=9164 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| | || || ||||| || || | Sbjct 1871 TCTCGTCACCGTCAAAGTCGGCGTTGTACGGCGAGCACACGCACTCGTTGAAGCGGAACG 1812 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 || | || ||| || | | |||||||| ||||||| ||| ||||| |||| | Sbjct 1811 TG---CGCCACGGCATGACCTTGGCGCGGTGCGCCATGATCGACATCTTGTGCAGCGACG 1755 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 ||||||| ||| || | ||||||||||| || ||| | ||| || |||| |||| Sbjct 1754 GCTGGCGGTTGAAGAGCACAATGTCGCCATCCTCCATGTGGCGCTCGACAATGTCACCGA 1695 >seq3651 Length=2478 Score = 86.0 bits (94), Expect = 3e-11 Identities = 127/177 (72%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 222530 CCGACTTTGGGTTCGCGCG-GATCAAGGAAACCAACGCCACCATGACACGGTGC---GGC 222585 |||||||||| ||||||| || | || | || ||| |||||||| |||| || Sbjct 538 CCGACTTTGGCATCGCGCGCGAACGAGCCA-CCGACGAGACCATGACGGCGTGCATTGGG 480 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 || ||| ||||| |||||||||| |||| | ||||||||| ||||||||||||| Sbjct 479 TCGTCGTTCTGGATGGCACCCGAGGTCATGCGCGGCGAGCGCTACGACGAGAAGGCCGAC 420 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTATGCG 222702 || | ||| |||||| || | | | |||| || |||| | ||| || || ||| Sbjct 419 GTGTTCTCCTTCGGCGTCGTGCTCTCGGAGCTCGACACGCACGAGCTGCCGTACGCG 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084340368543648