Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq217 291 6e-74 seq45 165 6e-36 >seq217 Length=20966 Score = 291 bits (322), Expect = 6e-74 Identities = 905/1377 (66%), Gaps = 44/1377 (3%) Strand=Plus/Plus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||| | || || || ||| || ||||||| ||||| || || | || || Sbjct 17023 GAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 17082 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || || || || || || || ||||| || |||| || || ||||| Sbjct 17083 GTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 17142 Query 65554 TCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 |||| |||| | | | | || ||| || || |||||| ||| | || Sbjct 17143 GCGCACGCCGTACTGCGCGACGCTGGCCTTGA-GCG---CGGCCCAGTCCCAGA--GGCC 17196 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 ||||| | | ||| |||||| || | || | | | || | || | ||||| | Sbjct 17197 GGACGTCGGCGTG-ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGC 17255 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGAGTGCG 65728 | | | || ||||| || | |||||| || || | || | || ||| | ||| Sbjct 17256 CCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGAGGCCTCCATCGCG 17314 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 | || || | |||||||| ||| || || || |||||||| |||||||| || Sbjct 17315 CCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGTGCCTCGTCGCTCTCAAAC 17374 Query 65789 GGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 | | || ||||| |||| || | ||| || ||||| || || || || ||||| || || Sbjct 17375 G-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCG 17433 Query 65848 ATGACGCAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 || |||| ||| || |||| |||| || | |||||||| ||||| ||||| | Sbjct 17434 GTGGCGCAGGTTGCTTCG-CTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCT 17492 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT 65966 || | ||||| || || || | ||| |||| | ||| || Sbjct 17493 TGTTGAGGTTGCGCGTGACGACCTTGGTGAT--GTCGTACAGCTTC------------TT 17538 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 | | ||| || || || ||||||||||| || || | || |||||||||| Sbjct 17539 GAAGTCGAA-GGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGC 17597 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || || | |||||| || | || ||||||| | ||| ||| || || || ||| Sbjct 17598 ACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGC 17657 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 | || ||||| | ||||| || || |||||| || || | |||||||||| ||||| Sbjct 17658 GGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGT 17717 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA-GC-GCGTGCCTT 66204 |||| ||||| ||||| | || ||||| | ||| ||| ||| || || ||| || Sbjct 17718 ACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGG- 17776 Query 66205 CACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | ||| | | | ||| | || | ||| ||||| || | ||| || ||||| | Sbjct 17777 -ATCGT-CTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 17834 Query 66264 CACCCCATACTTCGG--ACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||| | ||| | |||| || || || || || | ||| ||| || || Sbjct 17835 CACCCCA--CGTCGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCC 17892 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || || || ||| || ||||| || ||||| | |||||||| ||||| || Sbjct 17893 GTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACG 17952 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || ||| ||| ||||||| || || | |||||||||||| ||||||||||| Sbjct 17953 AGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGC 18012 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || || || || |||||||||||| | || ||||||||||| || || || Sbjct 18013 GTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCAC 18072 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || || || | |||||| || |||| ||| || ||||| ||||| || ||| || Sbjct 18073 ATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTT 18132 Query 66562 GGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 ||||| |||| || | || || || || | ||| || | | |||||| || | Sbjct 18133 CGTGCCACGGATGTACGA-GTTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGC 18191 Query 66621 CGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGT 66680 ||||| ||| |||||| || || | | || | ||||| || || |||| Sbjct 18192 CGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGT 18251 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 | |||| |||| || ||| |||| || || || || || ||| |||| || Sbjct 18252 CGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGA 18311 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 | || || || || |||||||| ||| | | |||||||| | ||||||||||| Sbjct 18312 ACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGA 18368 >seq45 Length=43062 Score = 165 bits (182), Expect = 6e-36 Identities = 582/890 (65%), Gaps = 33/890 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| | ||||| ||| || | | || | |||| |||||||| ||||| || Sbjct 41248 CGTTTCGTGCTCTTCCCGATCCAGGAGAACGAGGTCTGGCAGATGTACAAGAAGGCTGAG 41307 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGAGCG 61172 || ||||||||||| || ||| | || | || || ||| | || |||||| | Sbjct 41308 GCGAGCTTCTGGACGGCTGAAGAGATTGACCTCGTGCAC-GACCTCAAGGACTGGAACAA 41366 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | || | | || || || || ||| | |||||||| || || || Sbjct 41367 CCTCACGGACAACGAGCGCTACTTTATCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGA 41426 Query 61233 CGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG-GAGGTGCAAGTGTCGGA 61289 || |||||||| ||||| | | |||| || |||| |||||||| || | || Sbjct 41427 TGGCATCGTCAACGAGAACCTCGCGATGAACTTTA---GCAGCGAGGTGCAGGTTCCTGA 41483 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 41484 GGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAACATCCACTCGGAGGTGTACTC 41543 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA--TTGTTCAATGCC 61407 | |||||||| |||||||||| ||| | | | | | |||| | || ||| ||| Sbjct 41544 GCTGCTCATCGACACGTACATCAAGGACCAGACCG-AGAAGAACCACCTTCTTC-GCGCC 41601 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAG 61466 ||||||||||| || ||| || ||| || | ||||| |||| ||| | || | Sbjct 41602 ATCGAGACGATCCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCG 41661 Query 61467 TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 | | || | || | || || | | || || || | |||||||| | || || Sbjct 41662 CGCCGC-GCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTT 41720 Query 61527 CAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 | || ||||| | | ||||| ||| | ||||| || || |||||||| || || | Sbjct 41721 CTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAG 41780 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC- 61645 |||| || ||| | || || || |||||||| | || || || || || ||| Sbjct 41781 CTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTGCT 41840 Query 61646 -TATTCAAA---CGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || || || ||| | | || | ||| | ||| || | ||||| || Sbjct 41841 GTACTCCAAGCTCGCCAAC-----AAGC-TCC--CTGAGTCTCGCATCCACGAGATCATT 41892 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || || || | ||||| |||| || | ||| | | || || |||||| Sbjct 41893 CGCGATGCCGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAGCTCATC 41952 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 || ||||| | || |||| ||||| ||||| || ||||| || || | | Sbjct 41953 GGTATGAACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCAC 42012 Query 61822 G-ATTTGGGTATG--AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 | |||| || || |||||| || | ||||| ||||| | ||||||||| Sbjct 42013 GCGCTTGGCGTTGCCAA---GATCTACAAGGTGTCGAACCCGTTTGACTGGATGGACATG 42069 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 42070 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 42119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397514294029760