Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq2534 208 2e-50 seq3492 125 2e-25 seq4014 95.1 3e-16 seq2449 93.3 1e-15 seq4092 82.4 2e-12 >seq2534 Length=3429 Score = 208 bits (230), Expect = 2e-50 Identities = 426/629 (68%), Gaps = 13/629 (2%) Strand=Plus/Minus Query 1257 GCTCAAGTGACCAAGAGATCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAG 1316 |||||||| ||| | | ||| | || ||||||||| |||||||||| || |||||| | Sbjct 3232 GCTCAAGTCACCTTGCGGTCGGCGGAAGAAAAGAAGCGAAAACTTGATGACATCATCATG 3173 Query 1317 GAGATGCGAGGCATGATCGAAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGA 1376 || ||| |||| ||||| |||||||| || || || || |||| || || || | Sbjct 3172 GATATGAGAGGTATGATTGAAGAAGGCAAAGATGAAGAGGCGTTCAAGAAATTCCCAAGG 3113 Query 1377 AACTACTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTC 1436 || ||| |||| ||||| |||||| | || || || || ||| ||| | ||| Sbjct 3112 AAATACCTGACGTATGGTGAAAAGATCAAGTCTCTGGTC-------GTCCAGACCTGTTC 3060 Query 1437 AAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCC 1496 ||| ||||| ||||| || | ||| | ||| ||| ||| | | || || || Sbjct 3059 AAGGCTAACGGAGACCCCCATGTGTGGTTGTGGGGTCTTCCAGGTACGGATAAATCGGCT 3000 Query 1497 ATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGAC 1556 | || || ||||| || | || ||||||||||| || |||| |||||| |||||| Sbjct 2999 CTTATGGGCGTGATCTACCCCGACTACTACAACAAGAACCTAGACACCCGTTTTTTCGAC 2940 Query 1557 TTGTACCAGCCAAAAGTGCACACGCACATGCTT-CTTCAAGATGTCGATCACACGACG-- 1613 | ||| | | || || ||||| ||||| | |||||||||||||||| ||| Sbjct 2939 TGCTACAACGAAGAACATCATACGCA-TTGCTTGATGCAAGATGTCGATCACA--ACGTT 2883 Query 1614 GTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTT 1673 || ||||| ||||| ||||||||| | ||| | | || ||||| | || | ||| | Sbjct 2882 GTCGAAAAATTGGGTGTCCAGTTCTTCAAGTCTGTTTGCGACGAGTCGGGGTACCCGATC 2823 Query 1674 GACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTC 1733 || |||| |||| | | | ||| || | || | | || | |||||| Sbjct 2822 GATGTCAAGTTCAAGGCAGCCAAGATGGTCCGCATGACCATTCTTGTGACCGGTAACTTC 2763 Query 1734 ACCATCAACGATGTGATTCCGGAAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTG 1793 |||| |||| || | ||||||||| |||| ||||| ||| || || ||||||| Sbjct 2762 TGCATCGACGACGTCGTGCCGGAAGACTTGCCGGGACGTCGTGAGAACCTTGCGGCTCTC 2703 Query 1794 CGTCGTCGCTTCTATGAAGTGAACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTT 1853 ||||| || | | |||| ||| | || | ||| |||| ||| |||||| ||||| | Sbjct 2702 TCACGTCGTTTTTTTCAAGTAAACATCCGGGATCTCTTGCCGATCCTCGGATTGAAGATG 2643 Query 1854 CTGTCGAAGTACGAACTGAACGGCTTGAA 1882 | ||||| ||||| ||| ||||| Sbjct 2642 ATCAACAAGTATGAACTCAACTTGTTGAA 2614 >seq3492 Length=2171 Score = 125 bits (138), Expect = 2e-25 Identities = 204/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1450 ACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCA 1509 |||| ||| | ||| | | ||| ||| ||| | ||||| | ||||||||| || || Sbjct 689 ACCCACACCTGTGGGTGATGGGTTATCCGGGTACAGGCAAAACCGCCATCTTGAAGTTCC 630 Query 1510 TCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA 1569 | ||||| ||||| |||||||| |||||| | ||| || | || | || | Sbjct 629 TGTATCCGAAACTGTACAAGAAGAATCTCTTCAACCGATACTTTGATCTATATGATCCGA 570 Query 1570 AAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAG 1629 | | ||| || || || | ||| |||| | || ||| | || ||||| ||| | Sbjct 569 AGGAGCATACCCATGTGATGCTTGAAGACCTAGACCACGAAGCCGTCGAAAAATTGAGCA 510 Query 1630 TCCAGTTCCTAAAGACCATCTGTGACGAAGCTGG-TTTCCCAGTTGACCAAAAGTACAAG 1688 || | || | |||||||||||||| ||||| || ||||||| ||||||||||||||||| Sbjct 509 TCAACTTTATCAAGACCATCTGTGATGAAGCCGGGTTTCCCA-TTGACCAAAAGTACAAG 451 Query 1689 ACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATC 1739 | |||||||| || || ||||| ||||| ||| ||||| ||||| Sbjct 450 TCACCGCAACTCGCCAAGACGACTGTGTTGGTAAGTTCTAACTTTTCCATC 400 >seq4014 Length=1721 Score = 95.1 bits (104), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 959 AGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATC--GTCCTTACCAA 1016 ||||||||| | |||| || ||||| || || || |||| | | |||| ||||| Sbjct 486 AGGAAAGTTTCGATACGTTCTTGTCGGAGGTGTTGAAGTCGGC-ACCAAGTCCA-ACCAA 543 Query 1017 ACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAG 1076 ||||||| || | ||||| ||||| | || || ||||| ||||||||| | ||| Sbjct 544 GACGACTACCAGATTGAACACGTCCACGTTACCCTCGTCTACAACAACCGCGTCACCAAG 603 Query 1077 AACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGT 1136 ||| | || ||||| || ||||||||||| ||||| || || || |||||||| Sbjct 604 TCGTCCATCCTCAAGAACCTCGGCATCAAGCAAGGGAATGGTTACTATCTCGTTCCACGG 663 Query 1137 AACCGTGATCTGCCT 1151 ||||| ||||||| Sbjct 664 AACCGAAGTCTGCCT 678 Score = 95.1 bits (104), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 1509 ATCTATCC---TGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAG 1565 |||||||| |||||| ||| ||||| || ||||||||| |||||| | ||| | Sbjct 1315 ATCTATCCGAATGCGTA---CAAGAAGAACCTAAGCAACCGTTTTTTCGACCTCTACGAT 1371 Query 1566 CCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTG 1625 || ||||| ||||| |||||||| |||| |||| ||| || | ||| | Sbjct 1372 GACAAGGTGCATACGCATATGCTTCTGGAAGACCTCGACCACGAAGCGATCGAACGCCTT 1431 Query 1626 GGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTAC 1685 ||| || | || | ||||| | || ||||||||||||||| | || ||||| |||||| Sbjct 1432 GGAATCAACTTTATCAAGACGCTATGCGACGAAGCTGGTTTCGCGGTGGACCAGAAGTAC 1491 Query 1686 AAGAC--GCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 ||| | || || || | ||||| ||||| | ||| | |||| |||||| Sbjct 1492 AAGTCTTGCGGC--TTGTCGCGTACGACTGTGCTTGTCACCAGCAACCACACCAT 1544 >seq2449 Length=3581 Score = 93.3 bits (102), Expect = 1e-15 Identities = 201/292 (69%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 1452 CCTCACATCTGGCTT-ACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCAT 1510 || ||| | ||| || || |||| ||| || | ||||| | ||||| || | ||| Sbjct 2176 CCACACCTGTGGGTTCACGGGTA-TCCAGGCACGGGCAAAACCGCCATTCTGAACTACAT 2118 Query 1511 CTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAA 1570 |||||| | | ||| || || || ||||| |||||||| | || | || | Sbjct 2117 CTATCCGAAGGCGTTCAAGAAAAACCTCTACAACAAGTTCTTCGATCTTTATGATCCTAC 2058 Query 1571 AGTGCACACGCACATGCTTCTTCAAGATGTCGATCAC-ACGACGGTTGAAAAGT-TGGGA 1628 | ||||||||||| | ||| ||||| | |||||| | | || || || || | | Sbjct 2057 TGACCACACGCACATCATCCTTGAAGATCTGGATCACGAAGCCG--TGCAACGTCTCAGT 2000 Query 1629 GTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAG 1688 || | || ||||||||||| || ||||| || ||| | || || || |||||||| Sbjct 1999 ATCAACTTTACCAAGACCATCTGCGATGAAGCCGGGTTCGCCGTGGATCAGAAGTACAAA 1940 Query 1689 ACGCCGCAACTGGCTCGTACCA-CTGTCTTGGTCTCTTCCAACTTCACCATC 1739 || || || |||||||||||| |||| |||||| |||| || || || ||| Sbjct 1939 ACTCCACAGTTGGCTCGTACCACCTGT-TTGGTCACTTCTAATTTTACGATC 1889 >seq4092 Length=1673 Score = 82.4 bits (90), Expect = 2e-12 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1641 AAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 ||||||||||| || ||||| |||||| | || |||||||||||||||||||| || | Sbjct 1567 AAGACCATCTGCGATGAAGCCGGTTTCGCTGTCGACCAAAAGTACAAGACGCCACAGACG 1508 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCAT 1738 |||||||| || || | || | ||||| |||||| Sbjct 1507 GCTCGTACTACGGTACTAGTGACAAGCAACTACACCAT 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896157639080