Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq7454 127 9e-24 seq1775 127 9e-24 seq614 95.1 5e-14 seq38 89.7 2e-12 seq140 86.0 3e-11 >seq7454 Length=569 Score = 127 bits (140), Expect = 9e-24 Identities = 179/247 (72%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 250 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 309 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| ||| | | ||||| | |||| Sbjct 310 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGCCTACGGCGAGTACACGTTCGTCGGC 366 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| |||| |||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 367 ACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGAGAAGGCCGAC 426 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC-TATGCGGG 222704 |||||| |||| |||| | | |||||| || || | || ||| ||| || ||||| Sbjct 427 GTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTCGAGCGC-CGCGACCCGTACGCGGG 485 Query 222705 CCTCGAC 222711 ||| || Sbjct 486 GCTCAAC 492 Score = 86.0 bits (94), Expect = 3e-11 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 122211 TCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGG---AGGAGAACGTCACCATGACCC 122267 ||||||| ||||||||||| | | | | |||||| ||| ||| | | || | Sbjct 299 TCAAGGTCGCCGACTTTGGGCTCTCGCGCTTCAAGGCCAAGGCCTACGGCG--AGTACAC 356 Query 122268 G--CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAGCACGACGA 122325 | || ||||||||||| |||| |||||||||| |||| || |||||| ||||||| Sbjct 357 GTTCGTCGGCACGCCGTTCTGGGCGGCGCCCGAGGTCATTCGCCACGAGAGCTACGACGA 416 Query 122326 GAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTC 122371 ||||| ||||||||| || | |||||| |||| || ||||| Sbjct 417 GAAGGCCGACGTCTACAGCTTCGCCATCGTGCTCTGGGAGCTCGTC 462 >seq1775 Length=5132 Score = 127 bits (140), Expect = 9e-24 Identities = 342/510 (67%), Gaps = 20/510 (4%) Strand=Plus/Plus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| ||||| | || || ||||||| ||| | ||||||||| |||| Sbjct 548 AGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGCGAGCGGCCCTCGGTCGGCT 607 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 | |||||||| | | | ||| || | || | ||||||||| ||| | ||| | Sbjct 608 GTCGCGTGAGCACGGCGCGCGGGCCTCGAGCACGAGCGTGCATCTTGTCCATGACCATGT 667 Query 448779 GCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCGGCACGGCATCATCTCGCCC 448837 ||||||| ||||| || ||| |||| | || || ||| |||| | ||| |||||| Sbjct 668 GCTTGAGCTTCTGGTAGTAGATCGGGCCCATA-AAGATGTAGCACAGGATCGGTTCGCCC 726 Query 448838 GTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGAT--CATGCCCCTCTC-CTC 448893 || ||| ||| | | | ||| |||||| || | || | || | | | ||| Sbjct 727 GTGATGCCCGACGTCAGG-TAGTCCTTGCCCGCGTAGTTGAAGCCGTGGCGCACGAGCTC 785 Query 448894 ---CATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAA------AAGGCCGTGCCGTC 448944 | | |||| | | | | || ||| | || || || |||||||||| Sbjct 786 GCGCGAGCAGTCGAGCACGTTGTCCGCGGTGCCGTACGCCTCGCCGAACGCCGTGCCGTA 845 Query 448945 CT-GCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTG-GAGGGCCTCGAGCAACATGGCG 449002 | ||||| ||||||| || ||| | ||| | || ||||| || | || || Sbjct 846 CGCGCGGCG-GCCGCTCAG-CACGCCGGCCTTGCCGGCGATCAGCTCGATCATCTTGCCG 903 Query 449003 TAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCC 449062 |||||||| |||| | | |||||||||||||| | ||| || | ||||| | Sbjct 904 ACCGTCATGCGGCTCGGGAAACCGTGCGGGTTCATGATCAGGTCCGGGCACACGCCGTCG 963 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 ||||||| ||||||||||| ||||| | | |||| |||||||||||||||||| Sbjct 964 TCGTTGAACGGCATGTCCTCCTGGTTGCGGATCGTGCCGCACACGCCCTTCTGGCCGTGG 1023 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 || |||| ||||||||| || ||||||| Sbjct 1024 CGACTGCTGAACTTGTCGCCGATCTCGGGC 1053 >seq614 Length=12250 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || ||||| ||||||||| | || |||||||| ||||| ||||| Sbjct 1476 CTCGATCAACATACCGATCGTCATACGCGACGGGAACGCGTGCGGGTTGATGATAATGTC 1535 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 ||||| | ||| | | | |||| ||||||| ||| | | |||| ||| | | Sbjct 1536 GGGCGACATGCCCGACTCCGTGAACGGCATGTTCTCCTGC--GGCCAC-AGGATACTCAT 1592 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 |||||||||||| |||||||| |||||||||| || || |||| || || || Sbjct 1593 GACGCCCTTCTGTCCGTGGCGCGACGAGAACTTGTCACCGATGACCGGG-TTTCGGCAGA 1651 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 1652 AGCGCAGC 1659 >seq38 Length=44027 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| | || || ||||| || || | Sbjct 28860 TCTCGTCACCGTCAAAGTCGGCGTTGTACGGCGAGCACACGCACTCGTTGAAGCGGAACG 28801 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 || | || ||| || | | |||||||| ||||||| ||| ||||| |||| | Sbjct 28800 TG---CGCCACGGCATGACCTTGGCGCGGTGCGCCATGATCGACATCTTGTGCAGCGACG 28744 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 ||||||| ||| || | ||||||||||| || ||| | ||| || |||| |||| Sbjct 28743 GCTGGCGGTTGAAGAGCACAATGTCGCCATCCTCCATGTGGCGCTCGACAATGTCACCGA 28684 >seq140 Length=25772 Score = 86.0 bits (94), Expect = 3e-11 Identities = 167/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 122120 TACCTCCACAGCCTGCGACCGGCCATCGTGCACCGCGACATCAAGCCCTCTAACCTGCTG 122179 |||||||| ||| || ||| | |||| |||||| ||||| | |||| | ||| Sbjct 3188 TACCTCCATTCGCTGTCGCCCGCCGTGCTGCATCGCGACCTCAAGTCGCGTAACATCCTG 3129 Query 122180 GTGGACGTCAACGCCGAGGGCCAGCGCACCATCAAGGTGGCCGACTTTGGCTTTGCCCA- 122238 |||||| | || || |||| | ||| ||||| ||||||||||| | | | Sbjct 3128 CTGGACGAGA---CCCAG---CAGCTCGCCA---AGGTGACCGACTTTGGCGTCTCGCGG 3078 Query 122239 CATCAA--GGAGGAGAACGTCACCATGACCC---GCGCCGGCACGCCGTGCTGGATGGCG 122293 || || |||||||| | || ||||| ||| |||||| || ||||||||| Sbjct 3077 CAACAGTCGGAGGAGACGCTGACGCTGACCGCCGGCGTCGGCACATCGCTGTGGATGGCG 3018 Query 122294 CCCGAGATCATGCGAAACGAGAAGCACGACGAGAAGGTGGACGTCTACTCGTTTGGCATC 122353 |||||| ||||||| ||| | |||||||||||| ||||| | ||| |||||| || Sbjct 3017 CCCGAGGTCATGCGTGGCGACCGGTACGACGAGAAGGCCGACGTGTTCTCCTTTGGCCTC 2958 Query 122354 GT 122355 || Sbjct 2957 GT 2956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084435917353032