Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq2330 210 5e-51 seq4708 104 6e-19 seq1640 93.3 1e-15 >seq2330 Length=4173 Score = 210 bits (232), Expect = 5e-51 Identities = 472/708 (67%), Gaps = 1/708 (0%) Strand=Plus/Minus Query 1257 GCTCAAGTGACCAAGAGATCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAG 1316 |||||||| ||| | | || | || || |||||| ||||||| || || |||||| | Sbjct 2378 GCTCAAGTTACCTTGCGGTCCGCCGAAGAGAAGAAGCGAAAACTAGATGACATCATCATG 2319 Query 1317 GAGATGCGAGGCATGATCGAAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGA 1376 |||||||| || ||||| |||||||| || || |||||||||| ||||||||||| Sbjct 2318 GAGATGCGTGGAATGATTGAAGAAGGTAAAGACGACGAAGCCTTCAAGAAGTTTCCTCGC 2259 Query 1377 AACTACTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTC 1436 || ||| |||| ||||| |||||| | || | | | ||| || |||| ||| Sbjct 2258 AATTACCTGACGTATGGTGAAAAGATCAAGTCGCTCGTTGTGCAGAAACGAAACTTGTTC 2199 Query 1437 AAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCC 1496 ||| || || ||||| || | ||||| ||| |||||| | | || ||||| Sbjct 2198 AAGGCTAATGGAGACCC-CATGTGTGGCTATGGGGTCTGCCTGGTACCGCAAAATCTGCG 2140 Query 1497 ATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGAC 1556 || || || |||||||| | || ||||||||||| ||||||| |||||||||||| Sbjct 2139 ATTATGGGCGTGATCTATCCGGATTACTACAACAAGAACCTGGACACGCGTTTCTTCGAC 2080 Query 1557 TTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTT 1616 | ||| | | || |||||| ||| | ||||| || || || | |||| Sbjct 2079 TGCTACAACGAGGACCATCATACGCACTATCTTATGCAAGACGTGGACCATAATGTGGTT 2020 Query 1617 GAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGAC 1676 || |||||||| || ||||| | ||| | ||||| || ||| | || | ||| | || Sbjct 2019 GAGAAGTTGGGTGTGCAGTTTTTTAAGTCGATCTGCGATGAATCGGGGTACCCGATCGAT 1960 Query 1677 CAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACC 1736 |||| || || | | ||| || | || | | || | ||||| | Sbjct 1959 GTGAAGTTTAAAGCGGCCAAGATGGTCCGAATGACCATTCTTGTGACGAGTAACTTTTGC 1900 Query 1737 ATCAACGATGTGATTCCGGAAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTGCGT 1796 ||| ||||||| | || |||||| |||| || || ||| || || ||||| || | Sbjct 1899 ATCGACGATGTCGTGCCAGAAGACTTGCCTGGTCGGCGTGAGAACCTTGCGGCTTTGAAT 1840 Query 1797 CGTCGCTTCTATGAAGTGAACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTG 1856 || || || | |||| ||| |||||| | |||| ||| | ||||| | | Sbjct 1839 CGGCGTTTTTTCCAAGTCAACATTCGTGACTTGTTGCCGATTTTGTCGTTGAAGATGATC 1780 Query 1857 TCGAAGTACGAACTGAACGGCTTGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTC 1916 ||||| ||| ||||| |||||| ||| ||| || | | || ||||| Sbjct 1779 AACAAGTATGAAATGAACTTGTTGAAAAAGTCGGGTAATACGGACCTGAGAAAGCTCTTT 1720 Query 1917 ATGTCGTGGGATTACACTCGTGACATTCCCACTGGAGAGTCGTTGAAG 1964 ||||||||||| | ||||| ||||||||||||| |||||||| Sbjct 1719 ATGTCGTGGGACTGTCTGCGTGATTGTCCCACTGGAGAGCCGTTGAAG 1672 >seq4708 Length=1771 Score = 104 bits (114), Expect = 6e-19 Identities = 197/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1450 ACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCA 1509 |||||||| | ||| | | ||| |||||| |||| ||| | || ||| | || | Sbjct 1275 ACCCTCACCTATGGGTGATGGGTTATCCTGGAACTGGAAAGACGGCAATCCTCAAGTTTC 1334 Query 1510 TCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAA 1569 | ||||| | ||||| ||||| || ||| || |||||||| || ||| | || | Sbjct 1335 TGTATCCAAAGCTATACAAGAAGAACCTATTCAATCGGTTCTTCGATTTATACGATCCGA 1394 Query 1570 AAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAG 1629 | | |||||||| || | | ||||| | || ||| |||| || ||| | | Sbjct 1395 AGGAACACACGCATGTGATGTTGGAAGATCTAGACCACGAAGCGGTCGACAAGCTCAGCA 1454 Query 1630 TCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGA 1689 || | || | || || || || || ||||| || ||| | |||| |||||||||||| Sbjct 1455 TCAACTTTATCAACACGATTTGCGATGAAGCCGGGTTCGCCATTGATCAAAAGTACAAGT 1514 Query 1690 CGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATC 1739 | |||||||||||| || || || ||||| ||| ||||| || ||| Sbjct 1515 CACCGCAACTGGCTGAGACAACGGTATTGGTAAGTTCTAACTTTACAATC 1564 >seq1640 Length=6015 Score = 93.3 bits (102), Expect = 1e-15 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| ||||| || ||| || |||||||| || || | || || | |||||||| Sbjct 3320 TACAAAAAGAACCTATTCAATCGGTTCTTCGATTTATATGATCCGAAGGAACACACGCAT 3261 Query 1584 ATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAG 1643 || | | |||| | || ||| || | |||||| || | || | || | || Sbjct 3260 GTGATGTTGGAAGACCTAGACCACGAAGCGATCGAAAAGCTGAGTATCAACTTTATCTAG 3201 Query 1644 ACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGC 1702 |||||||| || |||||||| ||| | |||| |||||||||||||| ||||||||||| Sbjct 3200 ACCATCTGCGATGAAGCTGGGTTCTCCATTGATCAAAAGTACAAGACACCGCAACTGGC 3142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11895626968940