Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq881 127 9e-24 seq751 109 2e-18 seq1137 104 1e-16 seq504 95.1 5e-14 >seq881 Length=11095 Score = 127 bits (140), Expect = 9e-24 Identities = 361/540 (67%), Gaps = 26/540 (5%) Strand=Plus/Minus Query 448640 GCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGC 448699 ||||||||| ||| | || |||||||||| ||||| | || || ||||||| ||| Sbjct 2364 GCGCCGTAGCCGATGAGGCAGTCGCGCTCCATCTCGCCGAGACGCAGGCCGCCGTCGCGC 2305 Query 448700 AACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGC 448759 | ||||||||| |||||||||||||| | || || || | | |||| |||| Sbjct 2304 GAGCGGCCCTCGGTCGGCTGCCGCGTGAGCACCGCCCGGGGGCCGCGCGCACGCGCGTGC 2245 Query 448760 ATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAA-GGGCGCGTAGAACATGCG 448818 ||||| ||| | ||| |||||||| ||||| || ||| |||| | | ||| ||| Sbjct 2244 ATCTTGTCCATGACCATGTGCTTGAGTTTCTGGTAGTAGATCGGGCCCAT-GAAGATGTA 2186 Query 448819 GCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGA 448877 |||| | || ||||||||| ||| ||| | | | ||| ||||| || | | Sbjct 2185 GCACAGGATGGGCTCGCCCGTGATGCCCGACGTGAGG-TAGTCCTTGCCGGCG---TAGT 2130 Query 448878 TCATGCCCCT---------CTCCTCCATGTAGTC---CATGAGCTCGGCCACGGAG-AGG 448924 | | ||| | ||| | | |||| || | |||||| | | | | Sbjct 2129 TGAAGCCGTTGCGCACGAGCTCGCGCGAGCAGTCGAGCACGTTGTCGGCCGTGCCGTACG 2070 Query 448925 TC-CGAA-AAGGCCGTGCCGTCCT-GCGGCAAGCCGCTCT-CACAGCCCGTGATGGCCTG 448980 | || || |||||||||| | ||||| |||| | ||| ||| | || || Sbjct 2069 CCTCGCCGAACGCCGTGCCGTACGCGCGGCG-GCCGTTGAGCAC-GCCGGCCTTGCCCGC 2012 Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 || | ||||| || | || || |||||||| |||| || | |||||||||||||| Sbjct 2011 GATGAGCTCGATCATCTTGCCGACCGTCATGCGGCTCGGGAAGCCGTGCGGGTTCATGAT 1952 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100 || ||| || | |||| ||||||| ||||||||||| ||||| | ||| Sbjct 1951 GAGGTCCGGGCACACGCCCTGGTCGTTGAACGGCATGTCCTCCTGGTTGCGGATGGTGCC 1892 Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGT 449160 | |||||||||||||||||||| |||| ||||||||| || ||||||| ||| || Sbjct 1891 GCACACGCCCTTCTGGCCGTGGCGACTGCTGAACTTGTCGCCGATCTCGGGCCGGCGCGT 1832 >seq751 Length=12754 Score = 109 bits (120), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 || |||||||||||||||| ||| |||||| ||| ||| | | ||||| ||| Sbjct 9437 CAGCGCGACCTCAAGTCCAAGAACTGCCTCGTGTCCGAGCACCTCGTGGTCAAGGTCGCC 9496 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC----ATGACACGGTG--CGGC 222585 ||||||||| || |||| |||||| |||| | | | | ||||| | |||| Sbjct 9497 GACTTTGGGCTCTCGCGCTTCAAGG---CCAAGGTCTACGGCGAGTACACGTTCGTCGGC 9553 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGAC 222645 ||||||| |||| | || || ||| |||| ||| ||| |||| ||| ||||||||| Sbjct 9554 ACGCCGTTCTGGGCCGCGCCGGAGGTCATTCGCCACGAGAGCTATGACGAAAAGGCCGAC 9613 Query 222646 GTCTACTCGTTCGGCATCATCATGTGGGAGGTCATC 222681 |||||| ||||||||| | |||||||| || || Sbjct 9614 GTCTACAGCTTCGGCATCGTGCTGTGGGAGCTCGTC 9649 >seq1137 Length=8735 Score = 104 bits (114), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||| ||||||||||||||||| | |||||| | |||| | | | || ||| Sbjct 7625 ATCCTCCACCGCGACCTCAAGAGCCCGAACCTGTTGGTGGACAAGAACTACAACATCAAG 7566 Query 222526 GTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG--- 222579 || ||||||| ||| ||||||| | |||| | ||| |||||||| | Sbjct 7565 CTGTCCGACTTCGGGCTCGCGCGAGTGAAGG---CGCACGTGCAGACCATGACGGGCAAC 7509 Query 222580 TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGAG 222636 |||||||| | | |||| ||| |||||| | | || |||| || ||||| ||| Sbjct 7508 TGCGGCACCGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAAAAG---TACACGGAG 7452 Query 222637 AAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCC 222696 ||||||||||| | ||||||||||||| | || |||||| |||| |||||| || |||| Sbjct 7451 AAGGCCGACGTGTTCTCGTTCGGCATCGTGATCTGGGAGATCATGACGGGCGAGTGTCCG 7392 Query 222697 TA 222698 || Sbjct 7391 TA 7390 >seq504 Length=17599 Score = 95.1 bits (104), Expect = 5e-14 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| ||||||| || |||||| ||||||||| | || |||||||| ||||||||||| Sbjct 9267 CTCGATCAACATGCCGATGGTCATACGCGACGGGAACGCGTGCGGGTTGATGATGATGTC 9326 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGG---CCGTT 449103 |||| | ||| | | || |||| ||||||| ||| | | ||| ||| | | Sbjct 9327 CGGCGACATGCCCGACTCGGTGAACGGCATGTTCTCCTG--CGGCCA-GAGGATACTCAT 9383 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGA 449162 ||| || ||||| |||||||| |||||||||| || || |||| || || || Sbjct 9384 GACACCTTTCTGCCCGTGGCGCGACGAGAACTTGTCGCCGATGACCGGG-TTTCGGCAGA 9442 Query 449163 AGCGCAGC 449170 |||||||| Sbjct 9443 AGCGCAGC 9450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084324334293276