Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq715 244 8e-60 seq598 219 3e-52 seq176 212 5e-50 seq655 95.1 1e-14 >seq715 Length=275277 Score = 244 bits (270), Expect = 8e-60 Identities = 599/887 (68%), Gaps = 27/887 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||| ||| || | |||| || ||| |||||||| ||||||||| Sbjct 110669 CGATTCGTGCTCTTCCCGATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAA 110728 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGCG 61172 || |||||||||||| |||||| ||||| |||| || ||| | || ||||||| || Sbjct 110729 GCCAGCTTCTGGACGGTCGAGGAGATCGATCTTGTGCAC-GACCTCAAGGACTGGG-GCA 110786 Query 61173 T--TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | ||| | ||| | || ||||| || || ||| | |||||||| || || Sbjct 110787 ACATGACCGA-CAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGT 110845 Query 61231 GACGGTATCGTCAATGAGAA--TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 || ||||| || || ||||| || |||| ||| | || || || ||| | | Sbjct 110846 GATGGTATTGTGAACGAGAACCTTGCCATGAAC--TTCAGCAACGAAGTCCAGGTGCCTG 110903 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | || || || ||||||||||||||||||||||| ||||| |||||||||| |||||| Sbjct 110904 AAGCCCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCGGAAATGTACT 110963 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGA-TTGTTCAATG 61405 | | || || |||||||||| ||| || | || ||| |||| | |||||| | Sbjct 110964 CGCTGTTGATTGACACGTACATCAAGGATGCCGCCGAGAA---GAACCACTTGTTCCGCG 111020 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA-TCAC- 61463 |||| ||||| || || ||| || ||| || | ||||| || ||| | || Sbjct 111021 CCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACT 111080 Query 61464 CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 ||| | |||| | | |||| ||| || | | || || || | | |||||| | || Sbjct 111081 CAG-AGAACGCCG-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTT 111138 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 ||| || ||||| | | |||| ||| | ||||| ||||| || ||||| || || Sbjct 111139 CTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCT 111198 Query 61584 GACCTTCAGCAATGAGTTGATATCA--CGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 | |||| || ||| | ||||| || ||||| || | || ||||| || || Sbjct 111199 CAGCTTCTCGAACGAGCT--TATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCTGC 111256 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 ||||| | ||| | | || || || |||| | ||| ||| | |||||||| Sbjct 111257 TTGCTCTACAA---CAAGCTTGTCAACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTC 111313 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 |||| || || || ||||| |||| || | | ||| | | || ||| || ||| Sbjct 111314 AGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATC 111373 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 || ||||| | | || |||| ||||| || || || || || || ||||| | | Sbjct 111374 GGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCAC 111433 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | | ||| | | |||||| || || ||||||||||| | ||||| ||||| Sbjct 111434 GCTCTTGGTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATC 111493 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| ||||| || || || Sbjct 111494 TCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 111540 >seq598 Length=3624 Score = 219 bits (242), Expect = 3e-52 Identities = 552/830 (67%), Gaps = 8/830 (1%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| ||||| ||||| |||| || ||||||||||| ||||| | ||| || | | | | Sbjct 3475 CCACGAACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTG 3416 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||| | || ||||| || || |||| || || || | ||||| || | Sbjct 3415 TGTACTCGATCACCTCACAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGT 3356 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||| ||| || |||||||||| |||||| || || || ||||| | || | Sbjct 3355 TCGACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCG 3296 Query 66171 ACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACCGTACGTACC-GCCCTACCTT 66227 |||| | || ||| ||| |||| || | || | || | | | ||| | || | Sbjct 3295 ACTCGAGAATAGCGAACCA--GAGCTGCTGAGCACGGATGGT-CTTGCGAGCCTTTCCCT 3239 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 |||||| | |||| | ||||| ||||||||| | | || | | Sbjct 3238 CAGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCCCAGCAGCTGTAGAGGCCAG 3179 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | || || || || | || ||| || || | | ||| ||||| ||| || | Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACA 3119 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 ||| || ||||| | |||||||| | ||| || || || || |||| | ||||| | Sbjct 3118 AATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCTCATTACCGTGGT 3059 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || |||||| | |||||| |||||||| || |||||||| |||| ||||||||||| Sbjct 3058 TCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGA 2999 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 |||| ||| | || ||||| || || ||||| ||||||||||| | |||||| |||| Sbjct 2998 ACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACAC 2939 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT- 66586 ||||||| || ||||| || || || || || || ||| ||| | | | || Sbjct 2938 GCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCG-CGAATGTAACTGTTAGTG 2880 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || || | ||| | | | ||| |||||||||||| ||| |||||| ||| || Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | | || | || || || ||||||||| |||| || | || | | |||| Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || || || || || || | || ||| | ||| || || |||||||| ||| Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTC 66816 | | | |||||||| | ||| ||||||| | || |||||| ||| Sbjct 2699 AAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTC 2650 >seq176 Length=73234 Score = 212 bits (234), Expect = 5e-50 Identities = 476/706 (67%), Gaps = 8/706 (1%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| ||||| || ||||| | || || |||||||| ||||| | ||| || | | | | Sbjct 73085 CCACGAACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTG 73026 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||| | || ||||| || || |||| || || || | ||||| || | Sbjct 73025 TGTACTCGATCACCTCACAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGT 72966 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||||||| ||||||||||||| ||| ||||| || || ||||| | || | Sbjct 72965 TCGACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTG 72906 Query 66171 ACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACCGTACGTACC-GCCCTACCTT 66227 |||| | ||||||| ||| |||| || | || | || | | | ||| | || | Sbjct 72905 ACTCGAGGATGGCGAACCA--GAGCTGCTGAGCACGGATGGT-CTTGCGAGCCTTTCCCT 72849 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 ||| || | |||| | ||||| || ||||| ||| | |||| | Sbjct 72848 CAGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTT 72789 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 || | || ||| || | || ||| ||||| | | || ||||| ||| || | Sbjct 72788 GAGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACA 72729 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 ||| || ||||| | |||| ||||| || || || || || |||| | ||||| | Sbjct 72728 AATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGT 72669 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || |||||| | |||||| |||||||| || |||||||| |||| ||||||||||| Sbjct 72668 TCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGA 72609 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 |||| ||| | || ||||| || || ||||| ||||||||||| | |||||| |||| Sbjct 72608 ACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACAC 72549 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT- 66586 ||||||| || ||||| || || || || || || ||| ||| | | | || Sbjct 72548 GCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCG-CGAATGTAACTGTTAGTG 72490 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || || | ||| | | | | ||| || ||||||||| ||| ||||| | || || Sbjct 72489 GCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAG 72430 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGG 66692 | | || | | || || |||||||||||| |||| |||| Sbjct 72429 TTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGG 72384 >seq655 Length=2523 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||||||||| || || | || || | || |||||||| || ||| Sbjct 2237 TCCACAGTGAACTGGATCGCGTTCGCCTTTGGCTGCGTGCGGAGGTAGTACATACCTGTC 2296 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT--TCGGCT 65195 || || || ||| |||||||| |||||||| | || || | || |||||| Sbjct 2297 TTCAGTCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTAC--TGATCGTCGGCT 2354 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || | ||||| || | |||||||||||| |||| || |||||| || || |||| Sbjct 2355 CAGCAATATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGGCCA 2414 Query 65256 TGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 |||||| || || | | | | | |||||||| || ||||||||| Sbjct 2415 TGTCAA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564491959360