Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq260 111 3e-22 seq985 93.3 9e-17 >seq260 Length=11408 Score = 111 bits (122), Expect = 3e-22 Identities = 123/159 (77%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113 ||||| |||||||||| ||||||||||||||||| | ||| ||| |||||||||| Sbjct 1 TTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTTGGGCCGTGTCTCA 59 Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || ||| |||| |||||||| || ||| ||||| || ||| |||| |||||| || | | Sbjct 60 GTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAGTCGGCTTGGT-AGTCTT 118 Query 174 T--ACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 | | || |||||||| |||||| || | ||||||| Sbjct 119 TTAAACT-ACCAACTACCTAATCTTACGCAAACTCATCT 156 >seq985 Length=4014 Score = 93.3 bits (102), Expect = 9e-17 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| ||||||||||||||||| | ||| ||| |||||||||||| ||| Sbjct 4007 ATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTTGGGCCGTGTCTCAGTCCCAA 3949 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||||| || ||| ||||| || ||| | | |||||| | |||| | | Sbjct 3948 TGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTATTAAATTA 3889 Query 181 CCAACTAGC-TAATC 194 ||||||| | ||||| Sbjct 3888 CCAACTACCGTAATC 3874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071988819040